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PI0009745 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009745
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:19460130..19461535
RNA-Seq ExpressionPI0009745
SyntenyPI0009745
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]1.7e-1043.82Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        +KV KCGVCGL+GHPNDKCP+++E+ N++                               QR+   +KQQI+QLT AISK+EGKGKL A
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-1144.44Show/hide
Query:  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        N    +CGVCGL+GHPNDKCP ++E+ N++RK  L     M + +    L   T++         Q +KQQ++Q T AISK++GKGKLPA
Subjt:  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-1138.52Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIANDPHKQRHLQI----------------------------I
        G  +KV KCGVCGL+GHPNDKCP+++E+ NV+R+         P G T  +   D          Q+H Q+                            +
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIANDPHKQRHLQI----------------------------I

Query:  KQQISQLTNAISKLEGKGKLPA
        KQQI+QLT AISK++GKGKLPA
Subjt:  KQQISQLTNAISKLEGKGKLPA

KAA0058150.1 uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]4.1e-1246.74Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+         P G     +      N    Q   Q +KQQ++QLT AISK++GKGKLPA
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

KAA0066512.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-1044.44Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++++         P G     +      N    Q   Q +KQQ++QLT AISK++GKGKL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKL

TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein3.7e-1144.44Show/hide
Query:  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        N    +CGVCGL+GHPNDKCP ++E+ N++RK  L     M + +    L   T++         Q +KQQ++Q T AISK++GKGKLPA
Subjt:  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

A0A5A7ULU1 Retrotransposon gag protein2.2e-1138.52Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIANDPHKQRHLQI----------------------------I
        G  +KV KCGVCGL+GHPNDKCP+++E+ NV+R+         P G T  +   D          Q+H Q+                            +
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIANDPHKQRHLQI----------------------------I

Query:  KQQISQLTNAISKLEGKGKLPA
        KQQI+QLT AISK++GKGKLPA
Subjt:  KQQISQLTNAISKLEGKGKLPA

A0A5A7USL5 Retrotrans_gag domain-containing protein2.0e-1246.74Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+         P G     +      N    Q   Q +KQQ++QLT AISK++GKGKLPA
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

A0A5D3C4I5 Retrotransposon gag protein1.1e-1044.44Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++++         P G     +      N    Q   Q +KQQ++QLT AISK++GKGKL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKL

A0A5D3DIP6 Retrotrans_gag domain-containing protein8.3e-1143.82Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA
        +KV KCGVCGL+GHPNDKCP+++E+ N++                               QR+   +KQQI+QLT AISK+EGKGKL A
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGGACATCCTAATGACAAATGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTCGATCCTCAGAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAGCCAACGACCCGCACAAGCAACGTC
ATCTTCAAATAATCAAGCAACAAATATCTCAACTGACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGGACATCCTAATGACAAATGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTCGATCCTCAGAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAGCCAACGACCCGCACAAGCAACGTC
ATCTTCAAATAATCAAGCAACAAATATCTCAACTGACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA