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PI0009750 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009750
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:16737921..16739468
RNA-Seq ExpressionPI0009750
SyntenyPI0009750
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033168.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.3e-3954.78Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------
        T + + ST+++DVEE++AMFLH+LAHD+KN VIQR F+RSGET+ RHFN+VLLA++RL DELL KPQPV N CTD RWRW                    
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------

Query:  ---SMATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMA
           S+AT+ R PKH   KEE+  +V+CLVELV   GWRS+N TFR+GY + L +MMA
Subjt:  ---SMATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMA

KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]5.9e-3245.91Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED
        T   +++T+ +DVEE+V +FLH++AHDVKN V +R F RSGETVSRHFN+VL  VLRL + LL +P  V + C+  +WRW  MA+ +S+  KH WT  ED
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED

Query:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE
          LV+CL++LV    WR +N TF+ GY   +QK+M +++   NI  +  ++  +K +K+
Subjt:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE

KAA0035972.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-3134.67Show/hide
Query:  STEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------------
        STE +DVEE+VAMF H+LAHDVKNCVIQREF+RS ET+  HFN+VLL  +RL DELL KPQ V N+CTD +WR +                         
Subjt:  STEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------------

Query:  ---------------------------------------------------------------------------------------------------S
                                                                                                            
Subjt:  ---------------------------------------------------------------------------------------------------S

Query:  MATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMASTIDCRIKTMK
        M ++ R PKH WTKEE+A LV CLVELV   GWR +N TFR  Y   L +MMA ++PG N+ ASTID RIK +K
Subjt:  MATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMASTIDCRIKTMK

KAG6523854.1 hypothetical protein ZIOFF_013741 [Zingiber officinale]1.0e-3142.7Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMATSSRAP----------
        T   +K    + + E+V  FLH++AH+VKN +++R+  RSGETVSR F+LVL +VLRL + LL KP+P+   CTD RW+W  ++   + P          
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMATSSRAP----------

Query:  -----------KHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAST-IDCRIKTMK
                   KH WTK+EDA LVDCLVEL     W+S N  FR+GY  HL+K+MA ++P  N+ A+  I+ R K +K
Subjt:  -----------KHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAST-IDCRIKTMK

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]5.9e-3245.91Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED
        T   +++T+ +DVEE+V +FLH++AHDVKN V +R F RSGETVSRHFN+VL  VLRL + LL +P  V + C+  +WRW  MA+ +S+  KH WT  ED
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED

Query:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE
          LV+CL++LV    WR +N TF+ GY   +QK+M +++   NI  +  ++  +K +K+
Subjt:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein2.9e-3245.91Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED
        T   +++T+ +DVEE+V +FLH++AHDVKN V +R F RSGETVSRHFN+VL  VLRL + LL +P  V + C+  +WRW  MA+ +S+  KH WT  ED
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED

Query:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE
          LV+CL++LV    WR +N TF+ GY   +QK+M +++   NI  +  ++  +K +K+
Subjt:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE

A0A5A7SXP3 Retrotransposon protein1.8e-3134.67Show/hide
Query:  STEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------------
        STE +DVEE+VAMF H+LAHDVKNCVIQREF+RS ET+  HFN+VLL  +RL DELL KPQ V N+CTD +WR +                         
Subjt:  STEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------------

Query:  ---------------------------------------------------------------------------------------------------S
                                                                                                            
Subjt:  ---------------------------------------------------------------------------------------------------S

Query:  MATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMASTIDCRIKTMK
        M ++ R PKH WTKEE+A LV CLVELV   GWR +N TFR  Y   L +MMA ++PG N+ ASTID RIK +K
Subjt:  MATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMASTIDCRIKTMK

A0A5A7TI01 Retrotransposon protein4.1e-3140.09Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRW--------------------
        T + + S E++DVEE+VAMFLH++AHDVKN VIQREF+RSGET+SRHFN+VLL V+RL D+LL KPQPV N+CTD RWRW                    
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRW--------------------

Query:  -------LSMATSSRAPKHHW--------------------------------------------------TKEEDATLVDCLVELVAADGWRSNNRTFR
               +S     + PK ++                                                  TKEE+A LV+CLVELV   GWRS+N TF 
Subjt:  -------LSMATSSRAPKHHW--------------------------------------------------TKEEDATLVDCLVELVAADGWRSNNRTFR

Query:  SGYHSHLQKMMA
         GY + L ++MA
Subjt:  SGYHSHLQKMMA

A0A5D3CTT8 Putative nuclease HARBI16.3e-4054.78Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------
        T + + ST+++DVEE++AMFLH+LAHD+KN VIQR F+RSGET+ RHFN+VLLA++RL DELL KPQPV N CTD RWRW                    
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWL-------------------

Query:  ---SMATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMA
           S+AT+ R PKH   KEE+  +V+CLVELV   GWRS+N TFR+GY + L +MMA
Subjt:  ---SMATSSRAPKHHWTKEEDATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMA

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein2.9e-3245.91Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED
        T   +++T+ +DVEE+V +FLH++AHDVKN V +R F RSGETVSRHFN+VL  VLRL + LL +P  V + C+  +WRW  MA+ +S+  KH WT  ED
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMAT-SSRAPKHHWTKEED

Query:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE
          LV+CL++LV    WR +N TF+ GY   +QK+M +++   NI  +  ++  +K +K+
Subjt:  ATLVDCLVELVAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMAS-TIDCRIKTMKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-0637.84Show/hide
Query:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECT
        T  +++ T  I +E  +A+FL ++ H+++   +Q  F  SGET+SRHFN VL AV+ +S +     QP  N  T
Subjt:  TSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCCTCTGTCGTCAAATCTACTGAAATTATCGATGTCGAAGAAATAGTGGCAATGTTCCTTCACGTACTTGCGCACGACGTGAAAAATTGTGTCATTCAACGTGA
GTTCCTACGGTCTGGTGAGACGGTTTCACGACATTTCAACCTTGTACTCCTGGCTGTTTTAAGGCTTTCTGACGAGTTGTTGGCGAAACCACAACCAGTGATGAACGAGT
GCACAGATGCACGATGGAGGTGGTTGAGTATGGCAACTTCTTCGAGGGCTCCAAAGCACCACTGGACAAAAGAGGAGGATGCCACCCTCGTTGATTGTCTTGTGGAATTG
GTAGCAGCCGATGGGTGGAGGTCGAACAACAGGACGTTTAGATCCGGTTATCATAGTCATCTGCAGAAAATGATGGCCAAGAGGATGCCGGGACATAACATAATGGCTTC
GACCATAGATTGTCGAATAAAGACTATGAAAGAGCATTCCAAGCCATATCTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCCTCTGTCGTCAAATCTACTGAAATTATCGATGTCGAAGAAATAGTGGCAATGTTCCTTCACGTACTTGCGCACGACGTGAAAAATTGTGTCATTCAACGTGA
GTTCCTACGGTCTGGTGAGACGGTTTCACGACATTTCAACCTTGTACTCCTGGCTGTTTTAAGGCTTTCTGACGAGTTGTTGGCGAAACCACAACCAGTGATGAACGAGT
GCACAGATGCACGATGGAGGTGGTTGAGTATGGCAACTTCTTCGAGGGCTCCAAAGCACCACTGGACAAAAGAGGAGGATGCCACCCTCGTTGATTGTCTTGTGGAATTG
GTAGCAGCCGATGGGTGGAGGTCGAACAACAGGACGTTTAGATCCGGTTATCATAGTCATCTGCAGAAAATGATGGCCAAGAGGATGCCGGGACATAACATAATGGCTTC
GACCATAGATTGTCGAATAAAGACTATGAAAGAGCATTCCAAGCCATATCTGAAATGA
Protein sequenceShow/hide protein sequence
MTSSVVKSTEIIDVEEIVAMFLHVLAHDVKNCVIQREFLRSGETVSRHFNLVLLAVLRLSDELLAKPQPVMNECTDARWRWLSMATSSRAPKHHWTKEEDATLVDCLVEL
VAADGWRSNNRTFRSGYHSHLQKMMAKRMPGHNIMASTIDCRIKTMKEHSKPYLK