CuGenDBv2

Gene ID	PI0009759
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:18523187..18524003
RNA-Seq Expression	PI0009759
Synteny	PI0009759
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-48

69.44

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLVCR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +HILAHDVKNRV+QREF+ SGETISRHFNMVLLA + LHDEL+K
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

KAA0043030.1 retrotransposon protein [Cucumis melo var. makuwa]

2.7e-50

70.14

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Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD++ +   LT FT++QR++L+ L+ LM D+KRLPQT YD RHRIRQLAYF +IHESDLVCR+STRMDRR F ILCH LRTV+GL+STE+VDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+LAHDVKNRV+QREFV SGET+SRHFN+VL   V L++ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-48

69.44

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Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLVCR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +HILAHDVKNRV+QREF+ SGETISRHFNMVLLA + LHDEL+K
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

KAA0049910.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-48

68.75

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Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD++ +  +LT FT++QR++L+TL  LM D+KRLPQT YD RHRIRQLAYF +IHESDLVCR STRMDRR   ILCH LRTV+GL+STE+VDVE+MV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+ AHDVKNRV+QREFV  GET+S+HFN+VLLA V L+ ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-49

69.44

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Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD + +  +LT FT +QR++L+TL++LM ++KRLP T  D RHRIR+LAYF +IHESDLVCR+STRMDRR FAILCH LR VAGL+STE+VDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+LAHDVKNRV+QREFV SGET+SRHFN+VLLA + L++ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

5.4e-49

69.44

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLVCR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +HILAHDVKNRV+QREF+ SGETISRHFNMVLLA + LHDEL+K
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

A0A5A7TI78 Retrotransposon protein

1.3e-50

70.14

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD++ +   LT FT++QR++L+ L+ LM D+KRLPQT YD RHRIRQLAYF +IHESDLVCR+STRMDRR F ILCH LRTV+GL+STE+VDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+LAHDVKNRV+QREFV SGET+SRHFN+VL   V L++ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

A0A5A7TXW1 Retrotransposon protein

5.4e-49

69.44

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLVCR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +HILAHDVKNRV+QREF+ SGETISRHFNMVLLA + LHDEL+K
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

A0A5A7U3Q8 Retrotransposon protein

5.4e-49

68.75

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD++ +  +LT FT++QR++L+TL  LM D+KRLPQT YD RHRIRQLAYF +IHESDLVCR STRMDRR   ILCH LRTV+GL+STE+VDVE+MV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+ AHDVKNRV+QREFV  GET+S+HFN+VLLA V L+ ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

A0A5A7UUT3 Retrotransposon protein

6.4e-50

69.44

Show/hide

Query:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF
        MD + +  +LT FT +QR++L+TL++LM ++KRLP T  D RHRIR+LAYF +IHESDLVCR+STRMDRR FAILCH LR VAGL+STE+VDVEEMV  F
Subjt:  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRF

Query:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        +H+LAHDVKNRV+QREFV SGET+SRHFN+VLLA + L++ELIK
Subjt:  MHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.7e-10

34.04

Show/hide

Query:  FHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK
        + +++  +  C  + RMD+ +F  LC  L+T   L  T  + +E  +  F+ I+ H+++ R VQ  F +SGETISRHFN VL A + +  +  +
Subjt:  FHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIK

Sequences

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CDS sequence

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ATGGGCGGAAAATTTAAGGGACGGAAAAATAACGAACAGCGTAGATTTTTTACGTTTGAGTCATCCCAAAATGTGGAAGGCCGGTTTTTTTGGGTTCTGTCTAAGGGTCA
CAATACATGGACTAAGGCCACTGGCATACTTGCGCAGGTTCGTGGTCCACACACTGTAATGGATCGAAAAGCAATATCTGAGATTTTGACGGTGTTCACTGTGTCCCAAC
GTGAATTGCTAATGACGTTGGACATACTAATGAAGGACAGTAAGAGGTTACCACAAACTCTGTACGACATTAGACATAGGATTAGACAGCTAGCATATTTTCATTTGATC
CATGAGTCGGATCTTGTCTGTCGGCGAAGTACCAGAATGGACAGACGAATGTTTGCCATTCTATGCCATTTTCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGT
GGACGTCGAGGAGATGGTGGTCAGGTTCATGCACATCTTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAATTTGTGTGGTCTGGTGAGACAATTTCAAGGCATT
TCAACATGGTGTTGTTGGCCGCTGTACATCTGCATGACGAGCTGATAAAAAACCACAACCAATAA

mRNA sequence

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Protein sequence

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MGGKFKGRKNNEQRRFFTFESSQNVEGRFFWVLSKGHNTWTKATGILAQVRGPHTVMDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLI
HESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIKNHNQ

PI0009759 (gene) of Melon (PI 482460) v1 genome