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PI0009770 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009770
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr04:21184574..21184863
RNA-Seq ExpressionPI0009770
SyntenyPI0009770
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009803373.1 PREDICTED: uncharacterized protein LOC104248758 [Nicotiana sylvestris]3.5e-2065.38Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGRQTAANQM
        MCDASD AVGA+LGQ+K+K++HPIYYAS+TL++ Q NYT TEKE+LAVVFA +KFRSY+IGSK  L    R+   NQ+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGRQTAANQM

XP_012832904.1 PREDICTED: uncharacterized protein LOC105953771 [Erythranthe guttata]4.5e-2079.69Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCDASD AVGA+LGQ+KNK+ H IYYASKTL D Q NYTTTEKELLAVVFA EKFRSY+IG+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

XP_012837475.1 PREDICTED: uncharacterized protein LOC105958021 [Erythranthe guttata]4.5e-2079.69Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCDASD AVGA+LGQ+KNK+ H IYYASKTL D Q NYTTTEKELLAVVFA EKFRSY+IG+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]7.0e-2178.12Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCDASD A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTTTEKELLAVVFA +KFRSY+IG+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

XP_022158979.1 uncharacterized protein LOC111025424 [Momordica charantia]4.5e-2077.78Show/hide
Query:  CDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        CDASD A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTTTEKELLAVVFA  KFRSY+IG+K+
Subjt:  CDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

TrEMBL top hitse value%identityAlignment
A0A1U7YJR8 uncharacterized protein LOC1042487581.7e-2065.38Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGRQTAANQM
        MCDASD AVGA+LGQ+K+K++HPIYYAS+TL++ Q NYT TEKE+LAVVFA +KFRSY+IGSK  L    R+   NQ+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGRQTAANQM

A0A5A7TFL9 Transposon Ty3-I Gag-Pol polyprotein4.9e-2078.12Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCD SDV VGAM+GQ+K+KVIHPI Y SKTL +VQENYTTTEKELL VVFAIEK+RSYI+G+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201103.4e-2178.12Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCDASD A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTTTEKELLAVVFA +KFRSY+IG+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

A0A6J1E110 uncharacterized protein LOC1110254242.2e-2077.78Show/hide
Query:  CDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        CDASD A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTTTEKELLAVVFA  KFRSY+IG+K+
Subjt:  CDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

A0A6J1E3L7 uncharacterized protein LOC1110257542.9e-2076.56Show/hide
Query:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI
        MCDASD A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTTTEKELLAVVFA +K RSY+IG+K+
Subjt:  MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.7e-0946.27Show/hide
Query:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKE
        DASDVA+GA+L Q      HP+ Y S+TL + + NY+T EKELLA+V+A + FR Y++G    +  +
Subjt:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKE

P10394 Retrovirus-related Pol polyprotein from transposon 4121.1e-0542.03Show/hide
Query:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGR
        DAS  A GA+L Q  N    P+ YAS+  T  + N +TTE+EL A+ +AI  FR YI G    +  + R
Subjt:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.9e-0540.98Show/hide
Query:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSK
        DAS   +GA+L Q+      PI   S+TL   ++NY T E+ELLA+V+A+ K ++++ GS+
Subjt:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSK

P20825 Retrovirus-related Pol polyprotein from transposon 2975.4e-0843.28Show/hide
Query:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKE
        DAS++A+GA+L Q      HPI + S+TL D + NY+  EKELLA+V+A + FR Y++G +  +  +
Subjt:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-0741.67Show/hide
Query:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGS
        DAS+ A+GA+L Q       PI Y S++L   +ENY T EKE+LA++++++  R+Y+ G+
Subjt:  DASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGCAAGTGATGTTGCGGTAGGGGCTATGTTGGGCCAAAAGAAAAATAAAGTGATCCACCCTATATACTACGCGAGCAAGACTCTTACGGACGTTCAAGAGAA
CTACACTACTACGGAAAAGGAGTTGCTTGCGGTAGTATTTGCAATAGAAAAGTTCAGGAGTTACATAATTGGCTCTAAAATTCCTCTTGGCAAAGAAGGACGCCAAACCG
CGGCTAATCAGATGGGTGCTATTACTCCAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGCAAGTGATGTTGCGGTAGGGGCTATGTTGGGCCAAAAGAAAAATAAAGTGATCCACCCTATATACTACGCGAGCAAGACTCTTACGGACGTTCAAGAGAA
CTACACTACTACGGAAAAGGAGTTGCTTGCGGTAGTATTTGCAATAGAAAAGTTCAGGAGTTACATAATTGGCTCTAAAATTCCTCTTGGCAAAGAAGGACGCCAAACCG
CGGCTAATCAGATGGGTGCTATTACTCCAAGAATTTGA
Protein sequenceShow/hide protein sequence
MCDASDVAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTTEKELLAVVFAIEKFRSYIIGSKIPLGKEGRQTAANQMGAITPRI