; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0009807 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009807
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:9313998..9314534
RNA-Seq ExpressionPI0009807
SyntenyPI0009807
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-6576.07Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RW+WFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-6575.46Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIHESDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+ RHFN++ LA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein9.5e-6676.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

A0A5A7TXW1 Retrotransposon protein9.5e-6676.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

A0A5A7U476 Retrotransposon protein1.6e-6576.07Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RW+WFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

A0A5D3BDX0 Retrotransposon protein7.3e-6676.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RSGET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

A0A5D3BZB1 Retrotransposon protein2.8e-6576.07Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM
        MD H ++AS++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFTILCHLLRT+AGL ST+++DVEEMV M
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVM

Query:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN+VLLA++RLH ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.2e-0937.5Show/hide
Query:  FRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKP
        +R + +    C Q  RM   CFT LC++L+T   LQ T  I +EE V MFL +  H+   R +   F R+ ETV R F  VL A   L  + +  P
Subjt:  FRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKP

AT5G28730.1 unknown protein4.4e-0735.42Show/hide
Query:  IHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPV
        I+ +++ C+   RM    FT LC +L    GLQS+  I ++E V +FL + A +   R I   F  + ET+ R F+ VL A+ RL  E + +P+ V
Subjt:  IHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPV

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)6.6e-1136.36Show/hide
Query:  FRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRL
        +++++  +  C ++ RMD+  F  LC LL+T   L+ T  I +E  + +FL ++ H+++ R +Q  F  SGET+SRHFN VL A++ +
Subjt:  FRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVKNRVIQREFVRSGETVSRHFNLVLLAILRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACACACGACGATATTGCGTCTCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGACCTTGTGTGTCGTCAAAGTACGCGGATGGACAGACGATGCTTCA
CCATCTTATGCCACCTACTTCGGACTGTAGCGGGATTACAGTCGACCAAAATTATCGATGTCGAAGAAATGGTCGTCATGTTTCTTCACGTACTGGCGCACGATGTGAAA
AATCGTGTGATTCAACGTGAGTTTGTGCGGTCCGGTGAGACTGTTTCACGTCATTTCAATCTTGTACTGCTGGCCATTTTACGCCTACATGCCGAGCTTTTGGCAAAACC
ACAACCGGTGACAAGCACTTGCTCAGATGCACGGTGGAGGTGGTTCGAGGTACGATTTGTCATGGTCACCGTCCGACCAACAATATCGCGTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACACACGACGATATTGCGTCTCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGACCTTGTGTGTCGTCAAAGTACGCGGATGGACAGACGATGCTTCA
CCATCTTATGCCACCTACTTCGGACTGTAGCGGGATTACAGTCGACCAAAATTATCGATGTCGAAGAAATGGTCGTCATGTTTCTTCACGTACTGGCGCACGATGTGAAA
AATCGTGTGATTCAACGTGAGTTTGTGCGGTCCGGTGAGACTGTTTCACGTCATTTCAATCTTGTACTGCTGGCCATTTTACGCCTACATGCCGAGCTTTTGGCAAAACC
ACAACCGGTGACAAGCACTTGCTCAGATGCACGGTGGAGGTGGTTCGAGGTACGATTTGTCATGGTCACCGTCCGACCAACAATATCGCGTATTTGA
Protein sequenceShow/hide protein sequence
MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLRTVAGLQSTKIIDVEEMVVMFLHVLAHDVK
NRVIQREFVRSGETVSRHFNLVLLAILRLHAELLAKPQPVTSTCSDARWRWFEVRFVMVTVRPTISRI