CuGenDBv2

Gene ID	PI0009831
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr12:13152246..13152569
RNA-Seq Expression	PI0009831
Synteny	PI0009831
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0005488 - binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]

1.6e-25

59.43

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+L DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EAKG WK IL R SDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

KAA0036882.1 uncharacterized protein E6C27_scaffold2534G00010 [Cucumis melo var. makuwa]

7.7e-25

57.55

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDP+K YGI RLK LGA VF GST+  DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK IL RCSDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]

2.0e-25

57.55

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+  D + WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK IL RCSDAR+LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

KAA0042456.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.1e-26

58.49

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+  DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK+IL RCSDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]

2.4e-26

58.49

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+L DA AWL+MLEKCFDVM   ++RKV+LATFLLQ+EA+G WK I+ RC+DAR LDW+  +        PT   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SX02 CCHC-type domain-containing protein

7.5e-26

59.43

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+L DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EAKG WK IL R SDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

A0A5A7T0C1 Retrotrans_gag domain-containing protein

3.7e-25

57.55

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDP+K YGI RLK LGA VF GST+  DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK IL RCSDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

A0A5A7T7T0 Retrotrans_gag domain-containing protein

9.8e-26

57.55

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+  D + WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK IL RCSDAR+LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

A0A5A7TKI0 DNA/RNA polymerases superfamily protein

1.5e-26

58.49

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+  DA+ WL+MLEKCFDVM+  E+RKV+LATFLLQ+EA+G WK+IL RCSDAR LDW+  +        P+   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

A0A5D3CJL4 Retrotrans_gag domain-containing protein

1.2e-26

58.49

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Query:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ
        PSDPEK YGI RLK LGA+VF GST+L DA AWL+MLEKCFDVM   ++RKV+LATFLLQ+EA+G WK I+ RC+DAR LDW+  +        PT   +
Subjt:  PSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQ

Query:  LREMSF
         +   F
Subjt:  LREMSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTAGTGATCCAGAAAAGAAATATGGAATAGTGCGACTTAAGGCTCTAGGCGCCTCAGTTTTTTGGGGTTCCACAAATCTGACGGATGCCAAGGCATGGCTGAGCAT
GCTAGAGAAGTGTTTTGATGTGATGGACTATCTTGAAAAGAGGAAAGTTAAGTTAGCCACTTTCCTACTACAAGAAGAAGCAAAGGGATTGTGGAAGTTCATCCTAGTTA
GATGTAGTGACGCTAGGTTACTAGATTGGAGACCTTCCAAGGCATATTTGAGGACAAGTACTATCCCAACACTTACTGTGCAGCTAAGAGAGATGAGTTTCTGA

mRNA sequence

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Protein sequence

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MPSDPEKKYGIVRLKALGASVFWGSTNLTDAKAWLSMLEKCFDVMDYLEKRKVKLATFLLQEEAKGLWKFILVRCSDARLLDWRPSKAYLRTSTIPTLTVQLREMSF

PI0009831 (gene) of Melon (PI 482460) v1 genome