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PI0009884 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009884
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Genome locationchr08:8936946..8938220
RNA-Seq ExpressionPI0009884
SyntenyPI0009884
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043323.1 hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]1.7e-2541.26Show/hide
Query:  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMK-----------------
        SNL+++     + +  + + +SPL++HL+GL+EP S ESLT PH VDSAFEEVG S++   + AEQSLRP  LL+EIRR KM                  
Subjt:  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMK-----------------

Query:  --------------------------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK
                                                          +  ID++ELEVAK+Q+EVNTLE+T AI  E IEALATVR+SME AREEFK
Subjt:  --------------------------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK

Query:  NFKWKL
        NFKW+L
Subjt:  NFKWKL

KAA0048242.1 hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa]1.6e-2333.01Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +PPPSQ KL KNRG+NL  K+IR VE    TL++E                                               SPL+DHL+GL+E  S ES
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------
        L  PH VDS  EEVG S++P ++P EQSLRP ALL+EI R KM                                                         
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------

Query:  -------------------------------------------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK
                                                         K   ID+KELEV K+Q EVNTLE T  I  E I+ALATVR+SMEVA+EEFK
Subjt:  -------------------------------------------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK

Query:  NFKWKL
        NFKWKL
Subjt:  NFKWKL

KAA0050333.1 hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]9.3e-2430.88Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE---------------------------------------------SPLDDHLQGLVEPYSGESLT
        +PPPSQP+L KNRGSNL  K+IRLVE     L++E                                             SPL+DHL+GL+EP S ESLT
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE---------------------------------------------SPLDDHLQGLVEPYSGESLT

Query:  EPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM-----------------------------------------------------------
         PH VDSAFEEVG S++P  +P EQSLRP ALL+EIRR KM                                                           
Subjt:  EPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM-----------------------------------------------------------

Query:  -----------------------------------------------------------------------------------KNYVIDKKELEVAKIQE
                                                                                           +   ID++ELEVAK+ +
Subjt:  -----------------------------------------------------------------------------------KNYVIDKKELEVAKIQE

Query:  EVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
        EVNTLE+T AI  E IE LATVR+SME AREEFKNFKW+L
Subjt:  EVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]3.5e-2331.34Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +P PSQP+L KNRGSNL  K+IRLVE     L++E                                               SPL+DHL+GL+EP S +S
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM------------------------------KNY------------------------
        LT PH VDSAFEEVG S++   +PAEQSL P ALL+EIRR KM                               N+                        
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM------------------------------KNY------------------------

Query:  ---------------------------------------------------------------------------------VIDKKELEVAKIQEEVNTL
                                                                                          ID++ELEVAK+Q+EVNTL
Subjt:  ---------------------------------------------------------------------------------VIDKKELEVAKIQEEVNTL

Query:  ENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
        E+T AI  E IEALATVR+SME AREEFKNFKW+L
Subjt:  ENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

KAA0057699.1 hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa]1.6e-3138.46Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +PPPSQP+L KNRGSNL  K+IRLVE     L++E                                               SPL+DHL+GL+   S ES
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------
        L  PH VDSAFEEVG S++P  +P EQSLRP ALL+EIRR KM                                                         
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------

Query:  ----------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
                        +   ID++ELE+AK+Q+EVNTLENT AI  E IEALATVRKSME  REEFKNFKWKL
Subjt:  ----------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

TrEMBL top hitse value%identityAlignment
A0A5A7TIV2 Uncharacterized protein8.2e-2641.26Show/hide
Query:  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMK-----------------
        SNL+++     + +  + + +SPL++HL+GL+EP S ESLT PH VDSAFEEVG S++   + AEQSLRP  LL+EIRR KM                  
Subjt:  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMK-----------------

Query:  --------------------------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK
                                                          +  ID++ELEVAK+Q+EVNTLE+T AI  E IEALATVR+SME AREEFK
Subjt:  --------------------------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK

Query:  NFKWKL
        NFKW+L
Subjt:  NFKWKL

A0A5A7U349 PMD domain-containing protein4.5e-2430.88Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE---------------------------------------------SPLDDHLQGLVEPYSGESLT
        +PPPSQP+L KNRGSNL  K+IRLVE     L++E                                             SPL+DHL+GL+EP S ESLT
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE---------------------------------------------SPLDDHLQGLVEPYSGESLT

Query:  EPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM-----------------------------------------------------------
         PH VDSAFEEVG S++P  +P EQSLRP ALL+EIRR KM                                                           
Subjt:  EPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM-----------------------------------------------------------

Query:  -----------------------------------------------------------------------------------KNYVIDKKELEVAKIQE
                                                                                           +   ID++ELEVAK+ +
Subjt:  -----------------------------------------------------------------------------------KNYVIDKKELEVAKIQE

Query:  EVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
        EVNTLE+T AI  E IE LATVR+SME AREEFKNFKW+L
Subjt:  EVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

A0A5A7U8L3 PMD domain-containing protein1.7e-2331.34Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +P PSQP+L KNRGSNL  K+IRLVE     L++E                                               SPL+DHL+GL+EP S +S
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM------------------------------KNY------------------------
        LT PH VDSAFEEVG S++   +PAEQSL P ALL+EIRR KM                               N+                        
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM------------------------------KNY------------------------

Query:  ---------------------------------------------------------------------------------VIDKKELEVAKIQEEVNTL
                                                                                          ID++ELEVAK+Q+EVNTL
Subjt:  ---------------------------------------------------------------------------------VIDKKELEVAKIQEEVNTL

Query:  ENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
        E+T AI  E IEALATVR+SME AREEFKNFKW+L
Subjt:  ENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

A0A5A7UVX0 PMD domain-containing protein7.7e-3238.46Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +PPPSQP+L KNRGSNL  K+IRLVE     L++E                                               SPL+DHL+GL+   S ES
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------
        L  PH VDSAFEEVG S++P  +P EQSLRP ALL+EIRR KM                                                         
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------

Query:  ----------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL
                        +   ID++ELE+AK+Q+EVNTLENT AI  E IEALATVRKSME  REEFKNFKWKL
Subjt:  ----------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

A0A5D3C961 Uncharacterized protein7.7e-2433.01Show/hide
Query:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES
        +PPPSQ KL KNRG+NL  K+IR VE    TL++E                                               SPL+DHL+GL+E  S ES
Subjt:  MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE-----------------------------------------------SPLDDHLQGLVEPYSGES

Query:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------
        L  PH VDS  EEVG S++P ++P EQSLRP ALL+EI R KM                                                         
Subjt:  LTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKM---------------------------------------------------------

Query:  -------------------------------------------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK
                                                         K   ID+KELEV K+Q EVNTLE T  I  E I+ALATVR+SMEVA+EEFK
Subjt:  -------------------------------------------------KNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFK

Query:  NFKWKL
        NFKWKL
Subjt:  NFKWKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCCCCATCACAACCCAAACTATCCAAGAATCGAGGAAGTAACCTGGATGATAAACAGATTCGTTTGGTTGAAGTAACGACCCATACGCTCCAAAAGGAGTCACC
TTTGGATGATCATCTTCAAGGACTTGTAGAGCCATATAGTGGTGAATCTTTGACAGAGCCTCATGTTGTGGATTCGGCCTTTGAAGAGGTTGGTATTTCAAGATCACCAG
CAGCCAGACCAGCTGAACAATCTTTACGGCCCCTTGCTCTTCTCAAGGAGATTCGGCGTGACAAGATGAAAAATTATGTCATAGACAAGAAAGAACTGGAAGTTGCCAAG
ATCCAGGAAGAAGTCAACACTCTTGAAAACACCTCTGCTATCATTTATGAAGTCATCGAGGCTCTAGCTACAGTTCGTAAGAGTATGGAGGTTGCACGTGAAGAATTTAA
GAACTTCAAGTGGAAGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCCCCATCACAACCCAAACTATCCAAGAATCGAGGAAGTAACCTGGATGATAAACAGATTCGTTTGGTTGAAGTAACGACCCATACGCTCCAAAAGGAGTCACC
TTTGGATGATCATCTTCAAGGACTTGTAGAGCCATATAGTGGTGAATCTTTGACAGAGCCTCATGTTGTGGATTCGGCCTTTGAAGAGGTTGGTATTTCAAGATCACCAG
CAGCCAGACCAGCTGAACAATCTTTACGGCCCCTTGCTCTTCTCAAGGAGATTCGGCGTGACAAGATGAAAAATTATGTCATAGACAAGAAAGAACTGGAAGTTGCCAAG
ATCCAGGAAGAAGTCAACACTCTTGAAAACACCTCTGCTATCATTTATGAAGTCATCGAGGCTCTAGCTACAGTTCGTAAGAGTATGGAGGTTGCACGTGAAGAATTTAA
GAACTTCAAGTGGAAGCTTTGA
Protein sequenceShow/hide protein sequence
MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMKNYVIDKKELEVAK
IQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL