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PI0009897 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009897
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationchr03:26028926..26038002
RNA-Seq ExpressionPI0009897
SyntenyPI0009897
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138655.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]3.4e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +KGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_004138656.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]2.8e-51100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_008441202.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]2.6e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_038884625.1 transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida]4.0e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDA FKNEDSNE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]4.4e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDA+FKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LMF8 Transcription initiation factor IIA subunit 21.6e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +KGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A0A0LQ01 Transcription initiation factor IIA subunit 21.3e-51100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2F6 Transcription initiation factor IIA subunit 21.3e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2V9 Transcription initiation factor IIA subunit 21.3e-51100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 23.7e-4995.28Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 23.9e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IKGHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 24.2e-2652.53Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++  KGHL TYRFCD VWTFI+++ SF+ ++      +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 23.9e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IKGHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 28.7e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q54ND1 Transcription initiation factor IIA subunit 24.7e-2555.88Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEV--VGRIKIVACDS
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K   KG LHTYRFCD+VWTFIL++A FK E +NE+  V R+KIVACD+
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEV--VGRIKIVACDS

Query:  KL
         +
Subjt:  KL

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)6.2e-4988.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)6.2e-4988.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACATTCGAACTCTACCGCAGATCGACAATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTTCAGTTCGATAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACCTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTACAGGATGCGTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAA
mRNA sequenceShow/hide mRNA sequence
CTAAATTTCCTTTTCGTTTTATTTTGTTCTTTCGATTCAATAGAAAAAGTAAAGAAGGAAAAGCAAAAGCAACGGGAAACCCTAGCCACGATCTTCTTCTCTTTCTCTTT
CTTGCAACAGCCCCTCTCTGCGTGTTGCTTCAGCCGGCCAAGTCATCCACTCTCCCGCGACGACTGGGAGCGGCTACCAGCTAGTGAGCGGCGCGAGACCTTCCCTCCGG
CATCCCACTCTTGTCTTCACCTGCGTGCTTCTTCATTAACCACGCGACACTCGAAGTTCCAGCTACGCCGGCGCTTCCATCCTTCTGCGGCGGTGACCATCGACGTGAAA
CCCGCGACGTTGACGATTTACGAAACCCACACGGTCTAAACACCTTGCAGCGACGTTTTCCTCTCTTTCGGCGAGATCTTGATTTTCGAAGAAGAATGGCAACATTCGAA
CTCTACCGCAGATCGACAATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGA
TAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTACAGG
ATGCGTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAAGCTTTCAGACATATGGTTTATCCG
ATGAAATTTGCATAATTATTTGCTGATGATGGAGGGAAGAATAGTGGTGACGGTGAGGAGGAAATGGCCATCCAATGAAGAGATTCAAACGTGATTTTGTAAATTCAGTT
ACATTGACGATACATTTGACTGTAATTGGCTTCTAAAGTTGATTAGATAACATTGGTACGACCCTTCAAGTTCAATGATAATAAAACATGATGATGATATATGTTTCAAT
ATCATAATGCTATTAATTTTCTTTTGTACTACTTCCTTTCAAACTCATAACTTATCATGTCATTTATTGATACCTAATTTTTGTACATTAAAACTCAAATTACCACTTGA
AAAGGAACCAATTTGATTGGA
Protein sequenceShow/hide protein sequence
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ