CuGenDBv2

Gene ID	PI0009930
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr06:20385160..20385655
RNA-Seq Expression	PI0009930
Synteny	PI0009930
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040114.1 retrotransposon protein [Cucumis melo var. makuwa]

3.7e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF+WND+ KCI+A ++LF NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]

2.8e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
        +P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

KAA0064810.1 retrotransposon protein [Cucumis melo var. makuwa]

4.3e-44

63.31

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIA+M G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +YNQG+D+S DD+ +SRP H+ EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

4.8e-43

63.31

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCIIA ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

6.2e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9H0 Retrotransposon protein

1.8e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF+WND+ KCI+A ++LF NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

A0A5A7TRV1 Retrotransposon protein

3.0e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

A0A5A7UR77 Retrotransposon protein

1.4e-43

62.59

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
        +P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

A0A5A7VCA3 Retrotransposon protein

2.1e-44

63.31

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIA+M G +CSGF WND+ KCI+A ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +YNQG+D+S DD+ +SRP H+ EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

A0A5A7VES2 Retrotransposon protein

2.3e-43

63.31

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Query:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK
        +K+TFQAIAEM G +CSGF WND+ KCIIA ++LF+NWV SHPA KGLLNKP P+YD+L YVFG+DRA G   ETF DVGSN P GG+  F    G++  
Subjt:  MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVP-GGFKGFPTDYGHDTK

Query:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG
         P +Y+QG+D+S DD+ +SRP  + EGRTGSSGSKRKRG
Subjt:  IPMMYNQGLDMSTDDIASSRPGHSMEGRTGSSGSKRKRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

5.0e-06

29.63

Show/hide

Query:  SGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMG
        +GF W+ +   +IA   ++  ++ +HP  +    K +P Y +LC++FGK+ + G
Subjt:  SGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMG

Sequences

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CDS sequence

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ATGAAGAAAACATTCCAGGCCATTGCAGAAATGCACGGGTCGTCGTGTAGTGGGTTTGATTGGAACGATAAAATGAAGTGCATCATCGCTGTGAGAAAGTTGTTCGAAAA
TTGGGTGAACAGTCATCCTGCTGTAAAGGGCCTCCTAAACAAGCCACTTCCCCATTACGACGACCTATGCTACGTATTTGGGAAGGATCGTGCGATGGGAGCTCGTGTAG
AGACATTCGTCGATGTCGGGTCGAATGTGCCTGGAGGGTTCAAGGGATTTCCCACTGATTATGGCCACGATACAAAGATCCCTATGATGTACAATCAAGGACTAGACATG
TCGACTGATGACATTGCGAGCTCACGACCCGGTCACTCAATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCTAG

mRNA sequence

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Protein sequence

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MKKTFQAIAEMHGSSCSGFDWNDKMKCIIAVRKLFENWVNSHPAVKGLLNKPLPHYDDLCYVFGKDRAMGARVETFVDVGSNVPGGFKGFPTDYGHDTKIPMMYNQGLDM
STDDIASSRPGHSMEGRTGSSGSKRKRGG

PI0009930 (gene) of Melon (PI 482460) v1 genome