; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0009984 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009984
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchr08:7096463..7099538
RNA-Seq ExpressionPI0009984
SyntenyPI0009984
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]7.6e-6694.77Show/hide
Query:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFSTSPSPSCFP TS+IPSSMLLMKPIGFQPK FNGV LRN SFVENTASLVVKAASE DATGETDSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_008455762.1 PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]4.3e-6191.5Show/hide
Query:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLLCSNPLSTSFHFST     CFP TS+IPSSMLLMKPIGFQPK FNGV LRN  FVENTASLVVKAASE DATGE DSSEVQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]4.9e-5783.33Show/hide
Query:  SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP
        +FLLCSNPLSTS     F  S SPSPSCFP TS+ PSS+LLM+P+GFQPK FNGV LRN+SFVENTASL+VKA SEID TGETDS+E QP AEAKKEDVP
Subjt:  SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-5481.01Show/hide
Query:  SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED
        +FLLCSNPLS S H ST       SPSPSCFP   +  +SMLLMKP GFQPK FNGV LRN SFVENT S  VKAASEIDATGETDS+E +P+AEAKKED
Subjt:  SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]3.4e-5886.71Show/hide
Query:  MASFLLCSNPLSTSFH---FS--TSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED
        MASFLLCSNPLSTS H   FS   SPSPSCFPATS+ PS MLLMKPIGFQPK FNGV L   SFVEN ASL+VKAASEIDA G+TDSSE QP AEAKKED
Subjt:  MASFLLCSNPLSTSFH---FS--TSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein3.7e-6694.77Show/hide
Query:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFSTSPSPSCFP TS+IPSSMLLMKPIGFQPK FNGV LRN SFVENTASLVVKAASE DATGETDSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic2.1e-6191.5Show/hide
Query:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLLCSNPLSTSFHFST     CFP TS+IPSSMLLMKPIGFQPK FNGV LRN  FVENTASLVVKAASE DATGE DSSEVQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.4e-5783.33Show/hide
Query:  SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP
        +FLLCSNPLSTS     F  S SPSPSCFP TS+ PSS+LLM+P+GFQPK FNGV LRN+SFVENTASL+VKA SEID TGETDS+E QP AEAKKEDVP
Subjt:  SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.1e-5481.01Show/hide
Query:  SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED
        +FLLCSNPLS S H ST       SPSPSCFPA  +  +SMLLMKP GFQPK FNGV LRN SFVENT S +VKAASEIDATGETDS+E +P AEAKKED
Subjt:  SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like8.4e-5581.41Show/hide
Query:  SFLLCSNPLSTSFHFST-----SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP
        +FLLCSNPLS S H ST     SPSPSCFP   S  +SM LMKP GFQPK FNGV LRN SFVENT S +VKAASEID TGETDS+E +P+AEAKKEDVP
Subjt:  SFLLCSNPLSTSFHFST-----SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic7.0e-1442.86Show/hide
Query:  LLCSNPLSTSFHFSTS---PSPSCFPATS---SIPSSML----LMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKE
        LLC N  +T+   S+S   P P+  P +     +P++ L    ++ PI  +P+       +N  F+ + A           A  +++ ++    +E+KKE
Subjt:  LLCSNPLSTSFHFSTS---PSPSCFPATS---SIPSSML----LMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKE

Query:  D--VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
           V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  D--VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.1e-1458.24Show/hide
Query:  TASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        T   +V AA+E  A  + D S+V+ A      ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  TASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.3e-1548.68Show/hide
Query:  LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLE
        LLC N L +    S+S S S    + S  S +L +KP   + K  N V L   S   +   +VVKAA+      E +S E      A    VPVDKLPLE
Subjt:  LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLE

Query:  SKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        SK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  SKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 59.0e-1748.68Show/hide
Query:  LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLE
        LLC N L +    S+S S S    + S  S +L +KP   + K  N V L   S   +   +VVKAA+      E +S E      A    VPVDKLPLE
Subjt:  LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLE

Query:  SKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        SK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  SKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCGCCGTCGCCCTCATGTTTTCCAGCGACTTCTTCCATCCCTAGTTCTATGTT
GCTCATGAAGCCTATTGGGTTTCAGCCAAAACGCTTTAATGGAGTCGGGCTACGAAACCTCTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGA
TTGATGCTACGGGGGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGG
CTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGAT
GAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
GTGAGGGGCTCCCAGTTTACACCATGGCTTCTTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCGCCGTCGCCCTCATGTTTTCCAGCGACT
TCTTCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACGCTTTAATGGAGTCGGGCTACGAAACCTCTCTTTTGTTGAAAATACAGCGTCGTT
AGTTGTCAAAGCTGCATCTGAGATTGATGCTACGGGGGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCAT
TAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAG
GGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTCAATTCAATTCTTGCAGATCTAGAGGTGCCATTTCTCCTCATCGCTTCCA
TTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTTTTAATATACCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAATGTC
TAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAAATTTTTATTGGTAATCTTGCTAAAAAAACCTTGCACAAAGGCATTGTCTTAGA
AACTTAGACTACGATGAAATTGGTTAATAAGAGGCTTTTTTATTTTTCTTTTGTCTCTTATTTCTTTTCCAAATAGAATGAGAAGGCACGTCGAGATGAATGCCCCCCCC
CCCCCACATCAAGGGAGGAGTTTGAGGTTGACGTCTGTCTTAATTTGTACCGACTGTGGTTGAATAGAGATGAAAGGTAGGGGGAATATACACTTCAACTAAAACAAAGA
GTTCTAGTGAGTGGATTTTATTTTCTGCACTCTTAGAATAGTATGTAGGGACAGGAAGCATCTGCATTTACATGCTCTGTAGGAAGTACGGCATTCATGATGGCAAAACA
CATTTGAATATCTTTGTTTTTTAGGATTTAGAGCTCATTTGATAAGCTTTGTCCTTTCAATGTGTTTGAGTGAACCCCTCAATAGATGGGTAGGTTTTAGAGTTTAGTGT
AACTTTAACCCATTAAAACTACTCATTGTTGTTTGACAACAACAAAACAACAGAAGATATGTGGATGATTTGAACCTTCAACATCTTGGTCAAATGTGTTGACTAGTTTA
GCTAAACTAAAGTTGATTTTTTTTCTTGCTTCTTTCCAAGAGTATTTATAGGGAAAAAATGTGCTTTTCTGAAAAAACACTAGTCTCAACATTTATCCTAAAATTAACTC
TTAATTTGGTTTTTTAAATTATCATTATGCATACATGAGAGTTCAAAGTGATAAAATAATATACATATTTTCACCATCTCGAGATGTTCTATTTTCTTTTCAATTAAGTA
GTATATGTTTGTTTGTTTTATAATAGTTGTGTTATAATCTCCTCTTAAGCCTTAATGGTCATTACAACCTAAGGTTCAATTTCTACTTTATATTCACTCATTAATTCTAA
ACATCTAAACATATGTTTTACAGTGGATAATTGAATCGATAGCACTTTTTGTATTGAAATATGTTTAAGGGTTGTTCATGGGTCCATAATGTTTTTCTTTGATTCAAGAC
TTCGAGTACAGAAGGGGGGTGGGCGGCTGGAGCCCTTTCTCTGGCTCTTCTTTCTTCTTCTTGCTTTATTTCTTTTGGTCTTGAATCAAAGAAAAATGGGACGTCGTTCA
CTGAAATCGTCGGATCGACTGCTCTTGACCGGTGGCTTGTCTTCTTTCTTTTTCTTTCTTCTTTCTTTAAAGCATTGGCGATGTCATCCCAGGATTTAAGGGTAGATTTC
TCAATCTGTGTGAACCCCCATTCATTCTTTGCAATGGTAATATTATCTCATGCTTGGATTGAGC
Protein sequenceShow/hide protein sequence
MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER
LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV