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PI0010068 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010068
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:22139920..22141305
RNA-Seq ExpressionPI0010068
SyntenyPI0010068
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]3.3e-3467.65Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N++RKYDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++ K     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SP
         P
Subjt:  SP
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-3573.68Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVK
        GHPNDKCP+++E+ N++RKYDPHGNTYN GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++ K
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVK
KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-3567.65Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KAL T T+SFQ EMKQQM+QLT AISK++VK     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SP
         P
Subjt:  SP
KAA0065466.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-3466.98Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKC +++E+ N++RK+DPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ +MKQQM+QLT AISK++ KA+F+L
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SPIMQM
        +  M M
Subjt:  SPIMQM
TYK11282.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-3566.04Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KAL T T+SFQ EMKQQM+QLT AISK++VK     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SPIMQM
         P M M
Subjt:  SPIMQM
TrEMBL top hitse value%identityAlignment
A0A5A7UAL2 Retrotransposon gag protein4.2e-3567.65Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KAL T T+SFQ EMKQQM+QLT AISK++VK     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SP
         P
Subjt:  SP
A0A5A7VGL0 Retrotransposon gag protein1.6e-3466.98Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKC +++E+ N++RK+DPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ +MKQQM+QLT AISK++ KA+F+L
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SPIMQM
        +  M M
Subjt:  SPIMQM
A0A5D3CJ21 Retrotransposon gag protein2.5e-3566.04Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KAL T T+SFQ EMKQQM+QLT AISK++VK     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SPIMQM
         P M M
Subjt:  SPIMQM
A0A5D3CRR8 Retrotransposon gag protein2.5e-3573.68Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVK
        GHPNDKCP+++E+ N++RKYDPHGNTYN GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++ K
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVK
E5GBZ4 Retrotransposon gag protein1.6e-3467.65Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL
        GHPNDKCP+++E+ N++RKYDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++ K     
Subjt:  GHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQL

Query:  SP
         P
Subjt:  SP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGTGGAGCGACGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGT
CGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCGCAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAG
CTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGTAAAGGCAAGCTTCCAGCTCAGCCCG
ATCATGCAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGTGGAGCGACGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGT
CGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCGCAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAG
CTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGTAAAGGCAAGCTTCCAGCTCAGCCCG
ATCATGCAAATGTAA
Protein sequenceShow/hide protein sequence
MAPLPWSDGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEVKASFQLSP
IMQM