| GenBank top hits | e value | %identity | Alignment |
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| KAG7014568.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma] | 1.8e-17 | 75.76 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
+EAEL+V+V++HVL+P+HQLLTN+EKKTLLER T VKETQVTDP+AR+YG+K QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| XP_009337212.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Pyrus x bretschneideri] | 1.2e-16 | 73.85 | Show/hide |
Query: EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
EAEL+V+++EHVL+P+H++LTN+EKKTLLER T VKETQVTDPIA++YG+K QVVKIIRPSET
Subjt: EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| XP_016902349.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo] | 1.4e-17 | 77.27 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
+EAEL+V++++HVLIP+HQLLTN+EKKTLLER T VK+TQVTDPIAR+YGMK QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| XP_028944470.1 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Malus domestica] | 3.0e-17 | 52.25 | Show/hide |
Query: TIHTYQG-VKEESWESKRMLARKELLPEVGTI-----GKGFGNHSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHR
T+ TY +K E+ ++ ++ L P T GK +EAEL+V+++EHVL+P+H++LTN+EKKTLLER T VKETQVTDPIA++YG+K
Subjt: TIHTYQG-VKEESWESKRMLARKELLPEVGTI-----GKGFGNHSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHR
Query: QVVKIIRPSET
QVVKIIRPSET
Subjt: QVVKIIRPSET
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| XP_038895255.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] | 4.7e-18 | 55.93 | Show/hide |
Query: TIHTY-QGVKEESWESKRMLARKELLP----EVGTIGKGFGNHSE---EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIAR
T+ TY +K E+ ++ ++ L P +VG I F H E EAELMV++++HVLIP+HQLLTN+EKKTLLER T VKET QVTDPIAR
Subjt: TIHTY-QGVKEESWESKRMLARKELLP----EVGTIGKGFGNHSE---EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIAR
Query: HYGMKHRQVVKIIRPSET
+YGMK QVVKIIRPSET
Subjt: HYGMKHRQVVKIIRPSET
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1D1ZFV1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (Fragment) | 1.2e-16 | 50.86 | Show/hide |
Query: TIHTY-QGVKEESWESKRMLARKELLPEVGTIGKGFGN--HSE---EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHY
T+ TY +K E+ ++ ++ L P + + FG+ H E EAEL+V+++EHVL+P+HQLLTN++KKTLLER T +KET Q+TDPIAR+Y
Subjt: TIHTY-QGVKEESWESKRMLARKELLPEVGTIGKGFGN--HSE---EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHY
Query: GMKHRQVVKIIRPSET
G+K QVVKIIRPSET
Subjt: GMKHRQVVKIIRPSET
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| A0A1S3C8T2 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 | 2.1e-16 | 71.01 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
+EAEL+V++++HVLIP+HQLLTN+EKKTLLER TV + QVTDPIAR+YGMK QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| A0A1S4E290 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 | 6.6e-18 | 77.27 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
+EAEL+V++++HVLIP+HQLLTN+EKKTLLER T VK+TQVTDPIAR+YGMK QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| A0A498KFU4 Cytokinin dehydrogenase | 9.5e-17 | 53.1 | Show/hide |
Query: TIHTYQG-VKEESWESKRMLARKELLPEVGT-IGKGFGN-HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMK
T+ TY +K E+ ++ ++ L P T I + G H EEAEL+V+++EHVL+P+H++LTN+EKKTLLER T VKET QVTDPIA++YG+K
Subjt: TIHTYQG-VKEESWESKRMLARKELLPEVGT-IGKGFGN-HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMK
Query: HRQVVKIIRPSET
QVVKIIRPSET
Subjt: HRQVVKIIRPSET
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| A0A4Y1QZG9 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.2e-16 | 72.73 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
+E ELMV+V EHVL+P+HQLLTN+EKKTLLER T VKETQ+TDP+A++YG+K QV+KIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.3e-10 | 49.3 | Show/hide |
Query: HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
H EAELMV++ EH L+P+H ++T +EK LL R + + Q DP+AR++G++ QVVKIIRPSET
Subjt: HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 4.1e-17 | 66.2 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET
+EAE++V+++EHVL+P+HQ+LT +EKKTLLER T VKET QVTDPIAR++G+K QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET
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| Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 | 1.4e-09 | 50 | Show/hide |
Query: EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQV-----TDPIARHYGMKHRQVVKIIRPSET
EAEL+V++ H L+P H LLT +EK LL R +KE+Q+ DP+AR+YG+ VVKI+RPSET
Subjt: EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQV-----TDPIARHYGMKHRQVVKIIRPSET
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| Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 9.2e-09 | 31.3 | Show/hide |
Query: LEELENVYFNITTVRPSTIHTYQGVKEESWESKRMLARKELLPE----VGTIGKGFGNHSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET
+E E + T+R IH + E + + ++ + P + ++ + +E +L+V++ +HVL+P H L+ EKK LLER +KE+
Subjt: LEELENVYFNITTVRPSTIHTYQGVKEESWESKRMLARKELLPE----VGTIGKGFGNHSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET
Query: QV-----TDPIARHYGMKHRQVVKIIRPSET
Q+ DP+AR+ G++ Q+VKIIR SET
Subjt: QV-----TDPIARHYGMKHRQVVKIIRPSET
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.3e-10 | 49.3 | Show/hide |
Query: HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
H EAELMV++ EH L+P+H ++T +EK LL R + + Q DP+AR++G++ QVVKIIRPSET
Subjt: HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQVVKIIRPSET
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G33990.1 IQ-domain 9 | 2.6e-06 | 60.98 | Show/hide |
Query: SSSRVQQEIRARRLRMVTEYRVKQKKLENQMKLEAKIHELE
S S++Q EI+ARR+ MVTE+R+K K+LE+Q KLEAK+H++E
Subjt: SSSRVQQEIRARRLRMVTEYRVKQKKLENQMKLEAKIHELE
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| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 3.0e-07 | 39.71 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQVVKIIRPSE
E +L+V+V +HVL P HQ+L +KEK++LL++ ++ K+ DPI R+YG++ QV+K+ E
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQVVKIIRPSE
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.9e-18 | 66.2 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET
+EAE++V+++EHVL+P+HQ+LT +EKKTLLER T VKET QVTDPIAR++G+K QVVKIIRPSET
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.2e-05 | 38.33 | Show/hide |
Query: ELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQVVKI
+L+V++ +H L P HQ+L ++EK TLL++ ++ K+ D I R+YG++ QVVK+
Subjt: ELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQVVKI
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 1.6e-08 | 46.48 | Show/hide |
Query: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQ-----VTDPIARHYGMKHRQVVKIIRPSET
EEAEL+ ++ EH L+ + +L ++ KK LL +T +V++TQ VTDP+AR+YG+K QVVKI R T
Subjt: EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQ-----VTDPIARHYGMKHRQVVKIIRPSET
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