CuGenDBv2

Gene ID	PI0010112
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Translation initiation factor IF-2
Genome location	chr03:3468463..3471956
RNA-Seq Expression	PI0010112
Synteny	PI0010112
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN62818.1 hypothetical protein Csa_022087 [Cucumis sativus]

2.0e-82

89.81

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTK+EVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKI+NDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

XP_004150287.1 uncharacterized protein LOC101205851 isoform X2 [Cucumis sativus]

2.0e-82

89.81

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTK+EVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKI+NDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

XP_008445018.1 PREDICTED: uncharacterized protein LOC103488185 isoform X1 [Cucumis melo]

3.1e-83

90.78

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTKSEVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKIMNDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

XP_031736856.1 uncharacterized protein LOC101205851 isoform X1 [Cucumis sativus]

5.6e-80

85.65

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTK+EVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEF----------WMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMND
        EPLRIFYESLSKQIPASEMAEF          WMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKI+ND
Subjt:  EPLRIFYESLSKQIPASEMAEF----------WMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMND

Query:  SDDDDDFILSPKRRKM
        SDDDDDFILSPKRRKM
Subjt:  SDDDDDFILSPKRRKM

XP_038885128.1 uncharacterized protein LOC120075630 isoform X1 [Benincasa hispida]

1.1e-75

85.92

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSD K TLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKS+SLVTKSEVKSKTISSSSKTTTK+TTTTT TAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAY+KKLRRQKEQRTGTPIK  SAKP SRPESSQ+PQ  SKNGD+KAKKKIMNDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLY4 Uncharacterized protein

9.9e-83

89.81

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTK+EVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKI+NDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

A0A1S3BCG5 uncharacterized protein LOC103488185 isoform X1

1.5e-83

90.78

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR
        MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID+SIKNSI SSKHKSVSLVTKSEVKSKTISSSSKTTTK+TTTTTATAKVREKK    L          R
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFR

Query:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS
        EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQ  SKNGDIKAKKKIMNDSDDDDDFILS
Subjt:  EPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILS

Query:  PKRRKM
        PKRRKM
Subjt:  PKRRKM

A0A6J1BR23 uncharacterized protein LOC111004987 isoform X1

1.8e-60

72.25

Show/hide

Query:  MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK
        MV++ K T+SKLKP   DGGSRLKLESSD+K+KI++S K+SI  SK KS S++ KSEVKSK  SSSSKTT+K+TTTTT T KVREKK    L        
Subjt:  MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK

Query:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDF
          REPLRIFYESLSKQIP SEMAEFWMMEHGMLSPEKAK+AYEKKLRRQKEQRTGTP+K  S K  S+PESSQ+ Q+ SKNGD+KAKKKI NDS +DDDF
Subjt:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDF

Query:  ILSPKRRKM
        ILSPKRRKM
Subjt:  ILSPKRRKM

A0A6J1GJC9 uncharacterized protein LOC111454380 isoform X1

1.4e-60

74.76

Show/hide

Query:  MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK
        MVSDPK T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS++ KSEVKSKTI+SSSKTTTK+   TT+TAKVREKK    L        
Subjt:  MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK

Query:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDD-D
          REPLRIFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK  S KP SRPESSQRPQ  SKNGD+KAKKKI N+SDDDD D
Subjt:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDD-D

Query:  FILSPKRRKM
        FILSPKRRKM
Subjt:  FILSPKRRKM

A0A6J1KPA8 uncharacterized protein LOC111496374

2.2e-58

73.33

Show/hide

Query:  MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK
        MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS++ KSEVKSKTI+SSSKTTTK+   T++TAKVREKK    L        
Subjt:  MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK

Query:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDD-D
          REPLRIFYESLSKQI  S MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK  S KP SRPESSQRPQ   KNGD+KAKKKI NDSDDDD D
Subjt:  RFREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDD-D

Query:  FILSPKRRKM
        FILSPKRRKM
Subjt:  FILSPKRRKM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G19990.1 unknown protein

3.1e-12

34.65

Show/hide

Query:  STLSKLKPDGGS-----RLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEV----KSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK
        S+ +K KP  G+     +LK E +D     +  IK+S+  S+ K V    K E+    + K +S  + +   S        +   KK     V ++   K
Subjt:  STLSKLKPDGGS-----RLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEV----KSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLK

Query:  R----FREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPES------------SQRPQLLSKNGD-
        R     R+PLRIFYESL KQIP S+MA+ W+ME G+L  EKAKK  EKKL  QK  +  +P+KSA++ P S  +S            S+      K  D 
Subjt:  R----FREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPES------------SQRPQLLSKNGD-

Query:  ---IKAKKKIMNDSDDDDDFILSPKRRK
            K +KK  +D D DDDF+ S   +K
Subjt:  ---IKAKKKIMNDSDDDDDFILSPKRRK

AT5G11600.1 unknown protein

1.1e-28

45.45

Show/hide

Query:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID-NSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRF
        + +  +  +S  KP          S+ K K+  NS+K   +++   + SLV      + T+ S  K  T S T +    K + +K +  L          
Subjt:  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKID-NSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRF

Query:  REPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNG-DIKAKKKIM-NDSDDDDDF
        REPLRIFYESLSKQIP SEMAEFW+MEHGMLSPEKAK+A+EKK R+ K+ R GTP KSA     S+ ESSQR      NG D + KKK++ +D DDDDDF
Subjt:  REPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNG-DIKAKKKIM-NDSDDDDDF

Query:  ILSPKRRKM
        ILS KRRK+
Subjt:  ILSPKRRKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTTCAGACCCCAAGTCCACTCTTTCGAAGCTCAAACCTGATGGTGGCTCCAGGTTAAAGCTTGAATCCTCTGATCATAAGAAGAAGATTGACAACTCCATCAAGAA
CTCAATTCTCTCTTCCAAGCACAAATCCGTCTCACTTGTCACCAAATCCGAGGTAAAGTCAAAGACAATTTCGAGTTCTTCAAAGACGACAACAAAGAGTACAACAACTA
CTACTGCTACTGCTAAAGTGAGAGAAAAGAAGTGTTTAACTTGCCTGGTCAGAAATATGATCCACCTGAAGAGGTTTAGAGAGCCGCTTCGGATCTTCTACGAGTCCTTG
TCGAAACAAATACCAGCAAGTGAAATGGCAGAGTTTTGGATGATGGAGCACGGCATGTTATCTCCCGAGAAGGCTAAAAAGGCGTATGAAAAGAAACTGAGAAGACAAAA
GGAACAGAGAACCGGGACTCCGATTAAATCAGCATCAGCAAAACCCCTGAGCAGACCAGAGAGTTCCCAAAGGCCACAACTGCTATCCAAGAATGGTGATATAAAAGCAA
AGAAAAAGATCATGAACGATAGCGACGACGATGACGACTTCATTTTAAGCCCCAAAAGAAGAAAAATGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDNSIKNSILSSKHKSVSLVTKSEVKSKTISSSSKTTTKSTTTTTATAKVREKKCLTCLVRNMIHLKRFREPLRIFYESL
SKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQLLSKNGDIKAKKKIMNDSDDDDDFILSPKRRKM

PI0010112 (gene) of Melon (PI 482460) v1 genome