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PI0010121 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010121
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:14145059..14146260
RNA-Seq ExpressionPI0010121
SyntenyPI0010121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.1e-1440.71Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K  AQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG
        VISL+S K+L++    T   KV   PL   SK   KEE+G
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG

KAA0056553.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.1e-1441.01Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+I D N    + PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K PAQ +HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER
         ISL+SGK+L+S    T V KV   PL   SK   KEE+
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER

KAA0060357.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1441.3Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K PAQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEE
        VISL+SGK+L++    T   KV   PL   SK   +EE
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEE

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1340.29Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPSTSS----------------------------KATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK  +   T ST                                T SK++GK K  AQP HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPSTSS----------------------------KATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER
        VISL+SGK+L++    +   KV   PL   SK   KEE+
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]6.1e-1440.71Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K  AQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG
        VISL+S K+L++    T   KV   PL   SK   KEE+G
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919103.0e-1440.71Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K  AQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG
        VISL+S K+L++    T   KV   PL   SK   KEE+G
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG

A0A5A7V0M2 Retrotransposon gag protein6.0e-1541.3Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K PAQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEE
        VISL+SGK+L++    T   KV   PL   SK   +EE
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEE

A0A5A7V7P8 Retrotransposon gag protein6.6e-1440.43Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPSTSSKAT------------------------------VSKLEGKCKHPAQPNHAN
        E+IED N    ++PHG TYN GWRD+ N+RWGN  QK  +T P P++S++ T                              +SK++GK K PAQ +HAN
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPSTSSKAT------------------------------VSKLEGKCKHPAQPNHAN

Query:  ISVISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER
        +SVISL+SGK L++    T   KV   PL   SK   KEE+
Subjt:  ISVISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER

A0A5D3BX36 Retrotransposon gag protein3.0e-1441.01Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+I D N    + PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K PAQ +HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER
         ISL+SGK+L+S    T V KV   PL   SK   KEE+
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEER

A0A5D3DCG3 Retrotransposon gag protein3.0e-1440.71Show/hide
Query:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS
        E+IED N    ++PHG TYNSGWRD+ N+RWGN +QK     PT S                            T     +SK++GK K  AQP+HAN+S
Subjt:  ELIEDDN----HNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPS----------------------------TSSKATVSKLEGKCKHPAQPNHANIS

Query:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG
        VISL+S K+L++    T   KV   PL   SK   KEE+G
Subjt:  VISLQSGKVLNSFDDDTHVTKVDHPPLVDKSKVGVKEERG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTTACTTCAGATCGCATGCGTTCTGATGATGAGCTGGGCGAGCTGATGATATGCGAGTTGATTGAGGACGATAATCACAATCCCCATGGAAAGACCTACAACTC
AGGATGGAGAGACCATCTAAATATAAGATGGGGAAACCAAGATCAAAAGCCTGCTTACACCGCCCCCACTCCCTCCACATCATCTAAAGCCACGGTAAGCAAACTAGAAG
GTAAATGTAAGCATCCCGCCCAACCCAACCACGCCAACATTAGTGTAATCTCATTGCAGAGTGGTAAGGTTCTAAACTCTTTTGATGATGATACCCATGTGACAAAAGTC
GACCATCCCCCTCTTGTTGATAAATCTAAAGTTGGCGTCAAAGAAGAAAGAGGCATCAAAGGACGAGGAGCTCCTGGAAGTATTTATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGTTACTTCAGATCGCATGCGTTCTGATGATGAGCTGGGCGAGCTGATGATATGCGAGTTGATTGAGGACGATAATCACAATCCCCATGGAAAGACCTACAACTC
AGGATGGAGAGACCATCTAAATATAAGATGGGGAAACCAAGATCAAAAGCCTGCTTACACCGCCCCCACTCCCTCCACATCATCTAAAGCCACGGTAAGCAAACTAGAAG
GTAAATGTAAGCATCCCGCCCAACCCAACCACGCCAACATTAGTGTAATCTCATTGCAGAGTGGTAAGGTTCTAAACTCTTTTGATGATGATACCCATGTGACAAAAGTC
GACCATCCCCCTCTTGTTGATAAATCTAAAGTTGGCGTCAAAGAAGAAAGAGGCATCAAAGGACGAGGAGCTCCTGGAAGTATTTATTTATGA
Protein sequenceShow/hide protein sequence
MTVTSDRMRSDDELGELMICELIEDDNHNPHGKTYNSGWRDHLNIRWGNQDQKPAYTAPTPSTSSKATVSKLEGKCKHPAQPNHANISVISLQSGKVLNSFDDDTHVTKV
DHPPLVDKSKVGVKEERGIKGRGAPGSIYL