; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0010132 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010132
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationchr01:10520803..10524359
RNA-Seq ExpressionPI0010132
SyntenyPI0010132
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002531748.2 small nuclear ribonucleoprotein E [Ricinus communis]4.5e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKK+RKTLGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

XP_004139778.1 small nuclear ribonucleoprotein E [Cucumis sativus]2.0e-39100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

XP_012477072.1 PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium raimondii]5.9e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRK+LGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

XP_022156313.1 small nuclear ribonucleoprotein E-like [Momordica charantia]4.5e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

XP_039006230.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus]2.7e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

TrEMBL top hitse value%identityAlignment
A0A0A0K3R1 Small nuclear ribonucleoprotein E9.8e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

A0A1S3BIS5 Small nuclear ribonucleoprotein E9.8e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

A0A1U8JTM2 Small nuclear ribonucleoprotein E2.9e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRK+LGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

A0A5D2FR92 Small nuclear ribonucleoprotein E2.9e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRK+LGRILLKGDNITLMMNSGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

A0A6J1DT21 Small nuclear ribonucleoprotein E2.2e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E2.2e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E2.2e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E2.2e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E2.2e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E2.2e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein9.7e-4090.91Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.8e-3090.14Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLG

AT4G20440.1 small nuclear ribonucleoprotein associated protein B6.0e-0530.49Show/hide
Query:  IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNVKKKSRKTLGRILLKGDNITLMMNSG
        + +F+  + R+ I    Q   ++ G+ + FD +MNLVL D EE           +N +++ R+TLG +LL+G+ +  M   G
Subjt:  IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNVKKKSRKTLGRILLKGDNITLMMNSG

AT4G30330.1 Small nuclear ribonucleoprotein family protein2.6e-4092.05Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK+RK LGRILLKGDNITLMMN+GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK

AT5G48870.1 Small nuclear ribonucleoprotein family protein4.1e-0636.36Show/hide
Query:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--LGRILLKGDNITLMMNSG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L +ILL G+NI +++  G
Subjt:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--LGRILLKGDNITLMMNSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCAATTAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCT
GAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTAGGGAGGATAT
TGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAACAAAAATGAAAAAAAGAAAAAAATATTTCACATCTAAACCGTATAACCCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAACTGGCGACTGCGAGTGTGTGA
GCTGCGACTTGGGAGTGAAATCAGAGAGAGTTAGGTCTTCCAATTTCCTTTCTTGAGAAATCTATTTGATTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGA
CCCAACCAATTAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGAC
GAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTAGGGAGGATATTGCTTAAAGGGGATAACATAACTCTGATGAT
GAACTCGGGCAAGTGATGACCATTTTTGCACCAATATAAGAGTTAGTGAAGTGTGTAGCCCCTTTCAATGGTGAAACTTGGAAGCCTCGTGTTGATCATAACATAGAATG
TTATTTTTACTGTCAATTGGTTGGCTGTTTTTGTACTTGCCTTAAAAGAAATTAGAATGTCAGCTTATATGAGAGATAGTTATGGCACTCAATTCATCCAGCTCTAATGT
TGCTTAGATCATTGTATTTATTTTGCATATATCCTCAACTTTATGATACATGCTAGATATTACCGTTTGCTGAGCTATATTGTGGATTAATTGGACATCAAGTAGAAATT
GGTTCTTGTTTATCTTTATAAA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK