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PI0010232 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010232
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 6A-like
Genome locationchr04:30030223..30033815
RNA-Seq ExpressionPI0010232
SyntenyPI0010232
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0015031 - protein transport (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0005768 - endosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0035091 - phosphatidylinositol binding (molecular function)
InterPro domainsIPR006110 - RNA polymerase, subunit omega/K/RPB6
IPR006111 - Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
IPR012293 - RNA polymerase subunit, RPB6/omega
IPR020708 - DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
IPR028363 - DNA-directed RNA polymerase, subunit RPB6
IPR036161 - RPB6/omega subunit-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038819.1 PX domain-containing protein [Cucumis melo var. makuwa]1.2e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TYK31441.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. makuwa]1.2e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_004136357.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus]4.0e-6997.18Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD N DDVPGEP+EAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_008466421.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo]1.2e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_038878213.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]5.2e-6997.18Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MAD+DYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP EAEEKEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TrEMBL top hitse value%identityAlignment
A0A0A0LGM1 Uncharacterized protein1.9e-6997.18Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD N DDVPGEP+EAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A1S3CRD6 DNA-directed RNA polymerases II, IV and V subunit 6A-like6.0e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5A7TBT6 PX domain-containing protein6.0e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3E797 DNA-directed RNA polymerases II, IV and V subunit 6A-like6.0e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1J2R7 DNA-directed RNA polymerases II, IV and V subunit 6A-like9.5e-6996.5Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA
        MADDDYNDLDMGY+DEPPEPE+EEGAEEELD  NNDDVPGEP+EAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA

Query:  MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

SwissProt top hitse value%identityAlignment
O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC21.6e-2861.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC21.6e-2861.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q32PE0 DNA-directed RNA polymerases I, II, and III subunit RPABC21.6e-2861.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVP-GEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q9FJ98 DNA-directed RNA polymerases II, IV and V subunit 6A4.6e-6084.62Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEPIEAE+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Q9SJ96 DNA-directed RNA polymerases II and V subunit 6B1.2e-5782.52Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Arabidopsis top hitse value%identityAlignment
AT2G04630.1 RNA polymerase Rpb68.8e-5982.52Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

AT5G51940.1 RNA polymerase Rpb63.2e-6184.62Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEPIEAE+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-ANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATGCTAACAATGATGATGT
TCCTGGTGAACCCATTGAAGCCGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTA
CACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAAATACCCTTC
ACCATCCGTCGCTATCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
GTTTTACTGAAAAAGTATATGAAAAGTATATGAAATTATATTTCATGAGATCAATCATCAATAATAAAGGCACCGGTAGGCAGTAGGAAGGTTACCGAAAAAGGAAAAAA
ATAAACTCTTAAAACCCTTCCCTCTCTCTTTCTCCTTCGTCAAACCCTAATCCTCCCTCCCCAACTTTGACTCTCTTTGTCCTTCGGTTAGACTCACGATTCTCGAAAAT
ATTTCTTAAGGGTTTTGAATCCCAGTCCAGACCGAGGGTTTTCCACAGACCAACCGTTTTCTATTCTTCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGAT
ATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATGCTAACAATGATGATGTTCCTGGTGAACCCATTGAAGCCGAGGAAAAGGAAGAT
GAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGAT
GGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAAATACCCTTCACCATCCGTCGCTATCTGCCAGATGGAAGTTATGAAG
ACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGAATTTTGATGTTTTTGTGACATAATAGCTTCTGTCAATTGCATTGCCGA
TTTGTTCCCTCCTTTAATCAACTTGTGAATGTTGTGGTTGTTCCATTAACTTATTTATAATATTGGAGTGAATCACTTCTGAGAAACACACATTTCTTGTTAGTTTAGTT
AAACATGCCATTAACACTTGAAAAACATTCATTAGCCAAAAACTTTGTGCGTCTTAATTGCTCTTTCTG
Protein sequenceShow/hide protein sequence
MADDDYNDLDMGYEDEPPEPEIEEGAEEELDANNDDVPGEPIEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF
TIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA