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PI0010259 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010259
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr03:21278154..21278576
RNA-Seq ExpressionPI0010259
SyntenyPI0010259
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]8.8e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEI +K + IDAVTGR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR+NLTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4467.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4467.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4467.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++  +GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

TrEMBL top hitse value%identityAlignment
A0A5A7SKW3 Retrotrans_gag domain-containing protein4.3e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEI +K + IDAVTGR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR+NLTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

A0A5D3BRZ6 Reverse transcriptase5.6e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

A0A5D3BYE6 Reverse transcriptase2.5e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++  +GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

A0A5D3C4R1 Reverse transcriptase5.6e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

A0A5D3DQ20 Retrotrans_gag domain-containing protein5.6e-4567.13Show/hide
Query:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI
        MS++   GKA  DRLVE+EEQMLYL+E PD++R+LE R+EEISEK + IDAV GR++G PI+EL+TRVD LET       +NYERGDSSTGSVAHIEE +
Subjt:  MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKAT---RINYERGDSSTGSVAHIEEWI

Query:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM
         ELDSSQK+++EMINGM E+FRA LDV RNEI DV+AR++LTM
Subjt:  GELDSSQKSIIEMINGMLENFRAALDVFRNEIVDVSARVNLTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAACGAAGCAGATGGGCAAGGCCCACGCAGACCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTGTTGGAATTTCCAGACACCGTCCGCTTCTTGGAAGG
TCGGATTGAAGAAATTTCCGAGAAAGTCGACGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTTTAGAGACAA
AGGCTACAAGAATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAATGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTATCGAGATG
ATAAACGGCATGTTAGAGAATTTTCGTGCCGCTCTTGATGTCTTCAGGAATGAGATCGTAGACGTGAGCGCGAGGGTGAACCTCACGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAACGAAGCAGATGGGCAAGGCCCACGCAGACCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTGTTGGAATTTCCAGACACCGTCCGCTTCTTGGAAGG
TCGGATTGAAGAAATTTCCGAGAAAGTCGACGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTTTAGAGACAA
AGGCTACAAGAATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAATGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTATCGAGATG
ATAAACGGCATGTTAGAGAATTTTCGTGCCGCTCTTGATGTCTTCAGGAATGAGATCGTAGACGTGAGCGCGAGGGTGAACCTCACGATGTGA
Protein sequenceShow/hide protein sequence
MSTTKQMGKAHADRLVEIEEQMLYLLEFPDTVRFLEGRIEEISEKVDAIDAVTGRLDGLPIKELLTRVDTLETKATRINYERGDSSTGSVAHIEEWIGELDSSQKSIIEM
INGMLENFRAALDVFRNEIVDVSARVNLTM