CuGenDBv2

Gene ID	PI0010269
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	chr07:3255686..3260738
RNA-Seq Expression	PI0010269
Synteny	PI0010269
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

7.9e-169

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTE+GQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

TYK16939.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

2.6e-159

93.1

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVV
        INTE+GQCCDLGDIGKRVV
Subjt:  INTEEGQCCDLGDIGKRVV

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

3.9e-168

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN DP+PPRRKVKFAPKSSQRKR PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+A DVNEDGK FDKKTKDGI ESSSSA+ TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGL DENTE+TKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GSNCSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTEEGQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

XP_008453902.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]

3.9e-168

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTE+GQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

6.5e-155

85.29

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNPD +PPRRKVKFAPKS+ R+RPP PVQK EDEDG+GYVAQTRYLLRRA ENLGKR NKV++  SSVQVAFGPGA STSSSIRTYGVPKVEN SRKND
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEP+VDEDEEF+LP+ MDV E+GK+FDKKTKDGIAESSSSA+VTKTK+DYKEPWDY NS YPTTLP+RMPYSGDPE+LDEAEFGQD  +REYDE+SVIPA
Subjt:  IEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI
        LDLGL DE TENTKYFFQLPARLPLP+QS+ ATGKEKV NLRSS S  SS+LGDLKKLSAGCMGKLLIYKSGAIKLRLGD LYDVS GS+CSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI

Query:  NTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNL
        NT+EGQCCDLGDIGKRV+VTPDISSLLNS+TNL
Subjt:  NTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

1.9e-168

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN DP+PPRRKVKFAPKSSQRKR PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+A DVNEDGK FDKKTKDGI ESSSSA+ TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGL DENTE+TKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GSNCSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTEEGQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

1.9e-168

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTE+GQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

3.8e-169

93.43

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        INTE+GQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A5D3D2X2 Ribosomal protein L15

1.2e-159

93.1

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
        MKN D +PPRRKVKFAPKSSQR+R PP PVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEK  SSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKR-PPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN

Query:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP
        DIEPEVDEDEEFVLP+AMDVNEDGK FDKKTKDGIAESSSSA+VTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIP
Subjt:  DIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIP

Query:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA
        ALDLGLQDENTENTKYFFQLPARLPLP+QS+ ATGKEKV N RSSNSTSSSDL DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVS GS+CSFLQHVVA
Subjt:  ALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVV
        INTE+GQCCDLGDIGKRVV
Subjt:  INTEEGQCCDLGDIGKRVV

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like

5.1e-129

74.63

Show/hide

Query:  MKNPDPTPPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK
        MKNPDP+PPRRK+KFAPKS+ R+RPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVEK  SSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNPDPTPPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK

Query:  NDIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVI
         DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE LDEAEFGQDVM+REYDENS I
Subjt:  NDIEPEVDEDEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVI

Query:  PALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVV
        PALDLGL DEN+ENT+YFFQLPA LP P++S+ +TGKEKV NLRSS ST+SS+LGDL+ L  G MGKLLIYKSGA+KLRLGD LYDVS G +CSFLQHVV
Subjt:  PALDLGLQDENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVV

Query:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNL
        AINT++GQCCDLG+IGKRVVVTPDI SLLNS+T+L
Subjt:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVTNL

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

4.3e-08

41.56

Show/hide

Query:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

P25441 DNA-directed RNA polymerase III subunit RPC4

6.2e-07

30.25

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Query:  FQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLS----------AGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAIN-TEEG
        FQLP RLP  E+ A    KE+  ++ +  S  S    ++KK            AG +G + ++KSG + +++G+++ D+  G+  +FLQ V+A++  ++ 
Subjt:  FQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLS----------AGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAIN-TEEG

Query:  QCCD-LGDIGKRVVVTPDI
           + LG +  ++VVTP I
Subjt:  QCCD-LGDIGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

2.1e-07

37.11

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Query:  KEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        K++ A L  +  T       L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G    LG I  ++V +P+  SLL+
Subjt:  KEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc4

7.6e-05

35.06

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Query:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEG-----QCCDLGDIGKRVVVTPDISSL
        +K++ +G +G L IYKSG   L++G + YD+S G    FL+ V    T+ G      C  LG   + +V  P IS +
Subjt:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEG-----QCCDLGDIGKRVVVTPDISSL

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

2.5e-08

41.56

Show/hide

Query:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

1.4e-46

38.41

Show/hide

Query:  RRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDE
        +R+ +  P    R+ P  P   TE E+ E  +  +R   RR    +G+R  K E   SS +VAF P    +  +IR++GVPK E+    +D+ P      
Subjt:  RRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDE

Query:  EFVLPMAMDV---NEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLQ
          +LP    V    EDG+                  VT+T  DY EPWDY+NSYYPT LPLR P SGD E LD+ EFG+   NR+YDEN++  A +LGL 
Subjt:  EFVLPMAMDV---NEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLQ

Query:  D-ENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEG
          ++++   + F++P  LP+ +Q+  AT K      RS    SS      + L  G MGK+L+YKSGA+KL++GD L+DVSPG        VVAI+ +  
Subjt:  D-ENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEG

Query:  QCCDLGDIGKRVVVTPDISSLLNSVTNL
         C  +G   K V VTPD+ SLLN  +++
Subjt:  QCCDLGDIGKRVVVTPDISSLLNSVTNL

AT5G09380.1 RNA polymerase III RPC4

2.7e-42

38.04

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Query:  PPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDE
        PP RK+KFAPK+   KR P+P  K E  +     AQ   LLRR NE    R  K +K V + QVA+  G               V N +R N        
Subjt:  PPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDE

Query:  DEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLQD
                        K  ++   +G   S+S+  +     +YKEPWDY  SYYP TLP+R PY+GDPE LD  EF Q      + E+S+  A +LGL +
Subjt:  DEEFVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLQD

Query:  ENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEGQC
        ++ E   +F +LP+ +PL     A+T  E +    +          DLK L  G MGKLL+YKSGA+K++LG++LYDVSPG    F Q V+ +NTE+  C
Subjt:  ENTENTKYFFQLPARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEGQC

Query:  CDLGDIGKRVVVTPDISSLLNSVTNL
        C +GD+ K  V+TPDI S+L  + N+
Subjt:  CDLGDIGKRVVVTPDISSLLNSVTNL

Sequences

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CDS sequence

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ATGAAGAATCCCGATCCAACTCCTCCGCGCCGAAAGGTAAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACAACCGGTTCAGAAAACTGAAGATGAAGATGG
TGAGGGTTATGTTGCTCAAACACGCTACCTCTTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAATGTATCTTCAGTGCAAGTTGCATTCG
GGCCTGGTGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAG
TTTGTCTTGCCAATGGCTATGGATGTTAACGAAGATGGGAAAGTTTTTGATAAAAAAACCAAAGATGGAATAGCTGAATCCTCTAGTTCGGCTGTAGTAACCAAGACCAA
GAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGATCCTGAACGACTTGATGAAGCTGAGTTCG
GGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCAGGATGAAAACACAGAGAATACCAAGTACTTCTTTCAGCTTCCT
GCACGACTTCCTTTACCCGAACAATCGGCTGCTGCAACAGGAAAGGAGAAAGTAGCAAATTTGAGATCTTCAAACAGCACAAGCTCATCCGATCTCGGCGATTTGAAGAA
ACTGTCTGCTGGATGTATGGGAAAACTTCTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATATTCTTTACGATGTTTCTCCTGGATCAAACTGCAGTTTTC
TTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGCGATCTCGGAGACATCGGCAAACGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTG
ACTAATTTGAGATGA

mRNA sequence

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Protein sequence

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MKNPDPTPPRRKVKFAPKSSQRKRPPQPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKNVSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEE
FVLPMAMDVNEDGKVFDKKTKDGIAESSSSAVVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLQDENTENTKYFFQLP
ARLPLPEQSAAATGKEKVANLRSSNSTSSSDLGDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSPGSNCSFLQHVVAINTEEGQCCDLGDIGKRVVVTPDISSLLNSV
TNLR

PI0010269 (gene) of Melon (PI 482460) v1 genome