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PI0010301 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010301
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:14741676..14746421
RNA-Seq ExpressionPI0010301
SyntenyPI0010301
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]2.9e-6086.13Show/hide
Query:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE
        G+GVVR RGR RAYQNIQRRAQQEAP+ + NMGAIKFKIP+F  KTDPEEYIQWEKEVENVF C+NF DEQKVRFCV+KFKDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE

Query:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        API+S YEFKES RKRFVPNHFQRDMAQKLQALRQG+
Subjt:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]2.1e-7984.18Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  ++INHNDNQ EGDGSD LDDDQVTLL EPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q + NM AIKFKIP+F  KTDP+EYI+WEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        VF C+NF+DEQKVRF V+K KDYAQTWWDKLMSRRRRNLEAPI+SWYEFKESMRKRFVPNHFQRDMAQ+LQALRQG+
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]1.6e-6382.76Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  + INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQE PQ++RNM AIKFKIP+F GKTDPEEYIQWEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINS
        VFAC+NFS+EQKVRFCVAKFKDY QTWW KLMSRR+RNLEAPI+S
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINS

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]2.1e-7984.18Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  ++INHNDNQ EGDGSD LDDDQVTLL EPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q + NM AIKFKIP+F  KTDP+EYI+WEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        VF C+NF+DEQKVRF V+K KDYAQTWWDKLMSRRRRNLEAPI+SWYEFKESMRKRFVPNHFQRDMAQ+LQALRQG+
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

TYK10621.1 uncharacterized protein E5676_scaffold315G00990 [Cucumis melo var. makuwa]2.9e-6086.13Show/hide
Query:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE
        G+GVVR RGR RAYQNIQRRAQQEAP+ + NMGAIKFKIP+F  KTDPEEYIQWEKEVENVF C+NF DEQKVRFCV+KFKDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE

Query:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        API+S YEFKES RKRFVPNHFQRDMAQKLQALRQG+
Subjt:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

TrEMBL top hitse value%identityAlignment
A0A5A7TFU8 Retrotrans_gag domain-containing protein1.4e-6086.13Show/hide
Query:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE
        G+GVVR RGR RAYQNIQRRAQQEAP+ + NMGAIKFKIP+F  KTDPEEYIQWEKEVENVF C+NF DEQKVRFCV+KFKDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE

Query:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        API+S YEFKES RKRFVPNHFQRDMAQKLQALRQG+
Subjt:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

A0A5A7TK52 Retrotrans_gag domain-containing protein1.0e-7984.18Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  ++INHNDNQ EGDGSD LDDDQVTLL EPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q + NM AIKFKIP+F  KTDP+EYI+WEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        VF C+NF+DEQKVRF V+K KDYAQTWWDKLMSRRRRNLEAPI+SWYEFKESMRKRFVPNHFQRDMAQ+LQALRQG+
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

A0A5A7TYI0 Uncharacterized protein7.9e-6482.76Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  + INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQE PQ++RNM AIKFKIP+F GKTDPEEYIQWEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINS
        VFAC+NFS+EQKVRFCVAKFKDY QTWW KLMSRR+RNLEAPI+S
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINS

A0A5D3CFQ1 CCHC-type domain-containing protein1.4e-6086.13Show/hide
Query:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE
        G+GVVR RGR RAYQNIQRRAQQEAP+ + NMGAIKFKIP+F  KTDPEEYIQWEKEVENVF C+NF DEQKVRFCV+KFKDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLE

Query:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        API+S YEFKES RKRFVPNHFQRDMAQKLQALRQG+
Subjt:  APINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.0e-7984.18Show/hide
Query:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN
        M PPLA  ++INHNDNQ EGDGSD LDDDQVTLL EPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q + NM AIKFKIP+F  KTDP+EYI+WEKEVEN
Subjt:  MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVEN

Query:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN
        VF C+NF+DEQKVRF V+K KDYAQTWWDKLMSRRRRNLEAPI+SWYEFKESMRKRFVPNHFQRDMAQ+LQALRQG+
Subjt:  VFACNNFSDEQKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTCCTCTAGCACAACATGTAGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATAGTTTAGACGATGACCAAGTTACATTACTTAGGGAGCC
AAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCTCAGGTTGATCGCAACATGGGAG
CCATCAAATTTAAAATTCCACAGTTCATCGGGAAAACTGATCCGGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTTTTTGCTTGCAATAATTTTAGCGACGAA
CAAAAGGTTAGATTTTGTGTTGCCAAATTTAAAGATTATGCTCAGACTTGGTGGGACAAATTAATGTCTAGAAGGAGAAGAAATCTTGAAGCTCCAATTAATTCATGGTA
TGAATTCAAAGAGTCTATGAGGAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAACAATTGTACTAATGTTGTTA
GTACATTACTTGTCAAAAGATTGGGTTTGTCAACAATACTACATCCTAGACCTTACAAACTTCAATGGTTGAACAATAGTGGGGAAGTGCGAGTGAATAGACAATGTCTT
TGGGGAGAATCTCAAGAAAGGGCATTTAATGTTTTGAAAGAAAAATTAACTTCTGCACCTTTGTTGTCATTGACTAACTTTGAAAATACATTTGAAATTGAGTGTGATGC
TAGTAATTTTGATTTGAGGACGAATCCTTTTGAAGAGGGGGAGAATGATAAGAAGCTGACCAATCACGATGATAATGAAGCTCACCCAACTCAACCTAATTCAAAAGAAA
CTCATGCAACCATTATGCCATCAGGACCAATGACAAGAGCTAGAGCTAAAAGACTTGAAGAAGAATTAAATGATTACTTCCAAGATAAGTTTCTAAGTTATGGTGAAGAG
TTGCAATCTTTCAAGATTCAAGGTCATCCAAAAGCCACAATGAATTTGAAATTTCAAATTCATTCACATATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCTCCTCTAGCACAACATGTAGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATAGTTTAGACGATGACCAAGTTACATTACTTAGGGAGCC
AAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCTCAGGTTGATCGCAACATGGGAG
CCATCAAATTTAAAATTCCACAGTTCATCGGGAAAACTGATCCGGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTTTTTGCTTGCAATAATTTTAGCGACGAA
CAAAAGGTTAGATTTTGTGTTGCCAAATTTAAAGATTATGCTCAGACTTGGTGGGACAAATTAATGTCTAGAAGGAGAAGAAATCTTGAAGCTCCAATTAATTCATGGTA
TGAATTCAAAGAGTCTATGAGGAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAACAATTGTACTAATGTTGTTA
GTACATTACTTGTCAAAAGATTGGGTTTGTCAACAATACTACATCCTAGACCTTACAAACTTCAATGGTTGAACAATAGTGGGGAAGTGCGAGTGAATAGACAATGTCTT
TGGGGAGAATCTCAAGAAAGGGCATTTAATGTTTTGAAAGAAAAATTAACTTCTGCACCTTTGTTGTCATTGACTAACTTTGAAAATACATTTGAAATTGAGTGTGATGC
TAGTAATTTTGATTTGAGGACGAATCCTTTTGAAGAGGGGGAGAATGATAAGAAGCTGACCAATCACGATGATAATGAAGCTCACCCAACTCAACCTAATTCAAAAGAAA
CTCATGCAACCATTATGCCATCAGGACCAATGACAAGAGCTAGAGCTAAAAGACTTGAAGAAGAATTAAATGATTACTTCCAAGATAAGTTTCTAAGTTATGGTGAAGAG
TTGCAATCTTTCAAGATTCAAGGTCATCCAAAAGCCACAATGAATTTGAAATTTCAAATTCATTCACATATTTAA
Protein sequenceShow/hide protein sequence
MSPPLAQHVVINHNDNQYEGDGSDSLDDDQVTLLREPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPQFIGKTDPEEYIQWEKEVENVFACNNFSDE
QKVRFCVAKFKDYAQTWWDKLMSRRRRNLEAPINSWYEFKESMRKRFVPNHFQRDMAQKLQALRQGNNCTNVVSTLLVKRLGLSTILHPRPYKLQWLNNSGEVRVNRQCL
WGESQERAFNVLKEKLTSAPLLSLTNFENTFEIECDASNFDLRTNPFEEGENDKKLTNHDDNEAHPTQPNSKETHATIMPSGPMTRARAKRLEEELNDYFQDKFLSYGEE
LQSFKIQGHPKATMNLKFQIHSHI