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PI0010320 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010320
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationchr04:22381824..22387554
RNA-Seq ExpressionPI0010320
SyntenyPI0010320
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]3.4e-6292.48Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        M PRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTA NG+ VDRPICVGDQNEVLEKSQLE IASSSEIHN LNDEKL+K ILA
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]2.6e-6293.98Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTAPNGS VDRPICVGDQNEVLEKSQLE IASSSEIHN LNDEKLRK ILA
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPETELDKAMEDEAFRIFSSKISSIISS
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]5.0e-5888.72Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTAPNGSLVDRPICV DQ+EVLEKSQLE IASSSEI N+LNDE L+KLI A
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        I SSPDPETELD+AMEDEAFRIFSSKISSII S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]4.0e-5585.71Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS APNGS VDRP+ VGDQNEVLEK+QLE IASSSEI N+LNDEKLR LI A
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPE ELDKAMEDEAFRI SSKISSII S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]1.9e-5786.47Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCAI+PVS GDQ TAPNGSLVDRPI V DQNE+LEK QLE IASSSEIH+ LN E+L+KLILA
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPETELDKAMEDEAF IFS+KISSII S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein1.6e-6292.48Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        M PRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTA NG+ VDRPICVGDQNEVLEKSQLE IASSSEIHN LNDEKL+K ILA
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.2e-6293.98Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTAPNGS VDRPICVGDQNEVLEKSQLE IASSSEIHN LNDEKLRK ILA
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPETELDKAMEDEAFRIFSSKISSIISS
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X12.4e-5888.72Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTAPNGSLVDRPICV DQ+EVLEKSQLE IASSSEI N+LNDE L+KLI A
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        I SSPDPETELD+AMEDEAFRIFSSKISSII S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1ESW0 zinc finger HIT domain-containing protein 31.3e-5484.21Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS APNGS VDRP+ VGDQNEVLEK+QLE IASSSEI N+LNDEKLR LI A
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPE ELDKAMEDEAFRI S KISSI+ S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1JZX2 zinc finger HIT domain-containing protein 31.9e-5585.71Show/hide
Query:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA
        MGPR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS APNGS VDRP+ VGDQNEVLEK+QLE IASSSEI N+LNDEKLR LI A
Subjt:  MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILA

Query:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSPDPE ELDKAMEDEAFRI SSKISSII S
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKISSIISS

SwissProt top hitse value%identityAlignment
Q15649 Zinc finger HIT domain-containing protein 39.4e-0728.06Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAPNGSL-----VDRPICVGD------QNEVLEKSQLETIASSSEIHNSLNDE
        C +C E P KY+CP C  PYCS+VCF+KHKE  C    +PV +  +S  P  ++      D    + D      + + +    L+ +  S+ + + L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAPNGSL-----VDRPICVGD------QNEVLEKSQLETIASSSEIHNSLNDE

Query:  KLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII
         LR+L++ +D   D    +   M++  F  F+     I+
Subjt:  KLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII

Q2KIH1 Zinc finger HIT domain-containing protein 31.4e-0527.11Show/hide
Query:  GPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP---------------CAIK-------PVSEGDQS--TAPNGSLVDRPICVGDQNEV-------
        G   C VC E P KY+CP C  PYCSL CF+KHK  P               C I+       PV +  +S  TA     V+    + D + V       
Subjt:  GPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP---------------CAIK-------PVSEGDQS--TAPNGSLVDRPICVGDQNEV-------

Query:  -----LEKSQLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII
             +    L+ +  S+ + + L +  LR+L++ +D + D    +   M++  F  F+    SI+
Subjt:  -----LEKSQLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)3.6e-0627.14Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAP------------NGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLND
        C +C E P KY+CP C  PYCS+ CF+KHKE  C    +PV +  +S  P            + S+ D  +   ++ + +    L+ +  S+ + + L +
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAP------------NGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLND

Query:  EKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII
          LR+L++ +D   D    +   M++  F  F+     I+
Subjt:  EKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)1.5e-0426.15Show/hide
Query:  KYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAPNGSL-----VDRPICVGD------QNEVLEKSQLETIASSSEIHNSLNDEKLRKLILAI
        KY+CP C  PYCS+ CF+KHKE  C    +PV +  +S  P  ++      D    + D      + + +    L+ +  S+ + + L +  LR+L++ +
Subjt:  KYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEGDQSTAPNGSL-----VDRPICVGD------QNEVLEKSQLETIASSSEIHNSLNDEKLRKLILAI

Query:  DSSPDPETELDKAMEDEAFRIFSSKISSII
        D   D    +   M++  F  F+     I+
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKISSII

Q9CQK1 Zinc finger HIT domain-containing protein 32.1e-0626.47Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLR
        C VC E P KY+CP C  PYCS+ CF+KHKE  C+ +          P    ++S   + S+ D  +   ++ + +    L+ +  S  + + L +  LR
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLR

Query:  KLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII
        +L++++D   +    +   M++  F  F+     I+
Subjt:  KLILAIDSSPDPETELDKAMEDEAFRIFSSKISSII

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein2.4e-2645Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGS---------------------------------LVDRPICVGDQNEVLE
        C++C +  SKYKCP CL PYCSL CFK HKE PCA KP         P  S                                  V RPI V ++  +LE
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGS---------------------------------LVDRPICVGDQNEVLE

Query:  KSQLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSIIS
        K+Q E IASSSEI  +L DE L+KLI +IDSS +P  ELD+AM  EAFR F+ KI S IS
Subjt:  KSQLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSIIS

AT4G28820.2 HIT-type Zinc finger family protein1.9e-2647.47Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA---------IKPVS-----------------EGDQSTAPNGS-----LVDRPICVGDQNEVLEKS
        C++C +  SKYKCP CL PYCSL CFK HKE PCA          KP S                 E  Q  A   S      V RPI V ++  +LEK+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA---------IKPVS-----------------EGDQSTAPNGS-----LVDRPICVGDQNEVLEKS

Query:  QLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSIIS
        Q E IASSSEI  +L DE L+KLI +IDSS +P  ELD+AM  EAFR F+ KI S IS
Subjt:  QLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETELDKAMEDEAFRIFSSKISSIIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTCGGAAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTTTGTTTTAAGAAACACAAAGAAGT
GCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTGGGGACCAGAATGAAGTACTTGAAAAGT
CGCAGCTAGAGACTATTGCTTCTTCCTCAGAAATACACAATAGTTTGAATGATGAGAAACTCCGGAAGCTTATCCTTGCCATTGATAGCTCACCAGATCCGGAAACTGAA
CTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGATATCATCCATCATCAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
TTTTTATTTCTTCTAGGAGGGAGTACTTCGGTTTTGGTCTAAAACCCTCTCGTCGGACGGTGAAGCCAGCGCCAACTCCTTCCGCATTTGAGATTAAGAAATTGATCATT
CTATGGGTCCTCGGAAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTTTGTTTTAAGAAACACAAAGAA
GTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTGGGGACCAGAATGAAGTACTTGAAAA
GTCGCAGCTAGAGACTATTGCTTCTTCCTCAGAAATACACAATAGTTTGAATGATGAGAAACTCCGGAAGCTTATCCTTGCCATTGATAGCTCACCAGATCCGGAAACTG
AACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGATATCATCCATCATCAGCTCTTAGACCTAATAGTCATAGATGGAGGAGGGAAACAGTTTT
CCAAGACATGTATATGTATAAACAACGAGACGTTTCTGCCCCCTTGGCATAAGGGGTCAACTCAGCAGGTGATAATTTCAGCAAAGAACGACGCTTCTTGGATTGTAGTA
ATGCTTTGGGAGGCCATCTAAGTGCTCAGCTGCTATGATTAATGGTGATTGATGTACCAAGTTATAGTGATCAGTTTTCAAATACTAGAGGAACATGTCCTTTTGACGAT
CACCCAAATTCGTGTTTAATGATTTCTTGGCTGAATAGTATGTTGCAAGTCATGTTTTGACTAAAGGACTTGCGATTGAATTAACCAACTGAAAGTTGAAGGTTATATGA
TTTTATATCATAAAATTAGCATAGGTTTTATCATGATGAATCAGACTAAATTCCAATTGGGAAAGAAATGTGTGGTCTTTCCTGATCAGGCTACCAACCAACCAAATGGA
AGGTTGAGGATTAAAGAATTTGGGGAATAGAATGAGGGAACTTAGAGTTCGTTGGATAACGCTTTCATTTTGTTTCATTTTTTAAGAAACTGGATGTTTGTTTCTTGTTT
CACATTTTCC
Protein sequenceShow/hide protein sequence
MGPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTAPNGSLVDRPICVGDQNEVLEKSQLETIASSSEIHNSLNDEKLRKLILAIDSSPDPETE
LDKAMEDEAFRIFSSKISSIISS