CuGenDBv2

Gene ID	PI0010354
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr06:9237470..9238118
RNA-Seq Expression	PI0010354
Synteny	PI0010354
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035775.1 retrotransposon protein [Cucumis melo var. makuwa]

2.4e-61

63.37

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M++S+RAP+H WT+EEE  LVECL+ELVS GGW+SDNGTFRPGYLAQL +MMAEKLLG  ++ +  IDC +K+LK+T+QAIAEMR P+ SGFGWN+E +C
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDE
        I+A++ELFD+W++SH A K LL+K FPYYD+L+YVFGRD+AT+ +AETFA+VGSN P    D   +GD +++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDE

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

4.1e-61

63.22

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M++S+RAP+H WT+EEE  LVECL+ELVS GGW+SDNGTFRPGYLAQL +MMAEKL G  ++ +  IDC +K+LK+T+QAIAEMRGP+ SGFGWN+E +C
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEES
        I+A++ELFD+W++SH A K LL+K FPYYD+L+YVFGRD+AT  +AETFA+VGSN P    D   +GD +++ S
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEES

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]

3.8e-67

73.41

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        MTSSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQ+MM +KL  TNIQGS  +DC VKSLKK   +   MRGPS SGFGWNE++QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFD+W+KSH   + LLHKSFPYYDDLSYVF +D+ATEA  ETFA+VGSNV N FND V LGD +D++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-66

72.83

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        MTSSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQ+MM +KL  TNIQGS  +DC VKSLKK   +   +RGPS SGFGWNE++QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFD+W+KSH   + LLHKSFPYYDDLSYVF +D+ATEA  ETFA+VGSNV N FND V LGD +D++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]

6.9e-77

81.5

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M S SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQ+MMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRGPS SGFGWNEE+QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFDSW+KSH A K LLHKSFPYYDDLSYVFG+D+AT A +ETF NVGSNV N FND++ LGD HDE+
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4L3 uncharacterized protein LOC103485953

3.3e-77

81.5

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M S SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQ+MMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRGPS SGFGWNEE+QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFDSW+KSH A K LLHKSFPYYDDLSYVFG+D+AT A +ETF NVGSNV N FND++ LGD HDE+
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

A0A5A7T2T9 Retrotransposon protein

1.2e-61

63.37

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M++S+RAP+H WT+EEE  LVECL+ELVS GGW+SDNGTFRPGYLAQL +MMAEKLLG  ++ +  IDC +K+LK+T+QAIAEMR P+ SGFGWN+E +C
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDE
        I+A++ELFD+W++SH A K LL+K FPYYD+L+YVFGRD+AT+ +AETFA+VGSN P    D   +GD +++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDE

A0A5A7TJS2 Retrotransposon protein

1.8e-67

73.41

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        MTSSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQ+MM +KL  TNIQGS  +DC VKSLKK   +   MRGPS SGFGWNE++QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFD+W+KSH   + LLHKSFPYYDDLSYVF +D+ATEA  ETFA+VGSNV N FND V LGD +D++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

A0A5A7U0H7 Retrotransposon protein

3.3e-77

81.5

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        M S SRAPKHTWTKEEE K VECLVELVSSGGWRSDNGTF+PGYLAQLQ+MMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRGPS SGFGWNEE+QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFDSW+KSH A K LLHKSFPYYDDLSYVFG+D+AT A +ETF NVGSNV N FND++ LGD HDE+
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

A0A5D3D8J6 Retrotransposon protein

7.0e-67

72.83

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Query:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC
        MTSSSRA KHTWTKEEEAKLVECLVELVS+GGWRS+NGTFR GYLAQLQ+MM +KL  TNIQGS  +DC VKSLKK   +   +RGPS SGFGWNE++QC
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQC

Query:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE
        IIA+R+LFD+W+KSH   + LLHKSFPYYDDLSYVF +D+ATEA  ETFA+VGSNV N FND V LGD +D++
Subjt:  IIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

5.7e-05

30.3

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Query:  KSLKKTYQAIAEMRGPSSSGFGWNEEYQCIIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFG
        KSL++ + AI  +    S GF W+ E Q + A   ++  ++K+H   ++ + +  PYY DL  + G
Subjt:  KSLKKTYQAIAEMRGPSSSGFGWNEEYQCIIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFG

AT4G02210.2 unknown protein

5.7e-05

30.3

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Query:  KSLKKTYQAIAEMRGPSSSGFGWNEEYQCIIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFG
        KSL++ + AI  +    S GF W+ E Q + A   ++  ++K+H   ++ + +  PYY DL  + G
Subjt:  KSLKKTYQAIAEMRGPSSSGFGWNEEYQCIIAKRELFDSWLKSHSATKRLLHKSFPYYDDLSYVFG

Sequences

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CDS sequence

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ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAA
TGGGACATTTCGACCTGGATACTTGGCACAATTACAACAAATGATGGCGGAGAAGTTGCTCGGCACTAACATCCAAGGATCACCGACTATTGATTGTAGTGTCAAATCCC
TTAAGAAAACCTATCAAGCAATTGCAGAAATGAGGGGGCCATCCAGTAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGCAAAACGGGAGTTGTTTGATAGT
TGGCTCAAGAGTCATTCTGCGACCAAAAGACTTTTGCACAAATCATTTCCATATTATGACGATCTGTCGTATGTGTTCGGCAGAGATCAGGCAACAGAAGCATATGCGGA
GACCTTTGCTAACGTGGGATCTAATGTGCCAAATAGTTTTAATGACAGTGTTCTACTTGGTGATCTACATGATGAAGAATCCCAACGATGTATAGCCAAGGAGTGGATAT
GTCCCCAGATGACATGTTAG

mRNA sequence

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Protein sequence

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MTSSSRAPKHTWTKEEEAKLVECLVELVSSGGWRSDNGTFRPGYLAQLQQMMAEKLLGTNIQGSPTIDCSVKSLKKTYQAIAEMRGPSSSGFGWNEEYQCIIAKRELFDS
WLKSHSATKRLLHKSFPYYDDLSYVFGRDQATEAYAETFANVGSNVPNSFNDSVLLGDLHDEESQRCIAKEWICPQMTC

PI0010354 (gene) of Melon (PI 482460) v1 genome