CuGenDBv2

Gene ID	PI0010378
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr04:30261757..30264029
RNA-Seq Expression	PI0010378
Synteny	PI0010378
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.2e-111

97.06

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFT SVNKP+IVS +SRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

6.0e-111

96.57

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFT SVNKPV VS +SRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

1.4e-104

91.18

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVS +SRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDAL+YND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

5.5e-104

91.18

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK VIVS +SRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.8e-110

96.57

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFT SVNKPVIVS  SRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

5.9e-112

97.06

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFT SVNKP+IVS +SRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

2.9e-111

96.57

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Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFT SVNKPV VS +SRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

2.9e-111

96.57

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFT SVNKPV VS +SRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

7.0e-105

91.18

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVS +SRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDAL+YND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

2.6e-104

91.18

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK VIVS +SRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDAL+YNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQF+MVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

1.9e-78

68.34

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Query:  LSAAPSSMSL-ITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAGFDPLR
        L + PSS+S  + +    G +N+ ++ ++SS      +VPDFL ADW ++ +K P GPRL F+AE+A++HQLDALKYND P  DYGIEVMY+FAGFDP  
Subjt:  LSAAPSSMSL-ITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAGFDPLR

Query:  RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSLFVEENRFKQR+WI+G RP+EEEIF+F+M QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCCTTATCCGCGGCTCCTTCATCCATGTCTTTGATTACCAACCGCAAATTCACGGGTTCTGTCAATAAACCTGTGATTGTTTCCACGAGTTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCACTGAAATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCAGGGTTCGATCCTCTTCGAAGGTCAACATATTTC
GGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCTCCATGGTTCAGAGGGTTGGTGGCTCGTGGGATG
GGTATTGGCTTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTATTAA

mRNA sequence

Show/hide mRNA sequence

GGTAATTTGACACAAATCCAAGAAAAATGGTAACTGAACAAGAACAGATCAAATCGACGCTTCACTTCCACAACGCTAATCAATCGTCAATCATCGATTTCATCAGAGAA
GAAGAAGTAGATTCTGAAGGGTAAGACTCTCCTCAGGTGGAAGAGGATGTCATGTTGTTCGTCCTTATCCGCGGCTCCTTCATCCATGTCTTTGATTACCAACCGCAAAT
TCACGGGTTCTGTCAATAAACCTGTGATTGTTTCCACGAGTTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAG
GATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAAATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCAT
GTACCAGTTTGCAGGGTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATC
GTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAA
ATATTTCAATTCTCCATGGTTCAGAGGGTTGGTGGCTCGTGGGATGGGTATTGGCTTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTATTA
AGGAAAAGGACGTTGTGCTACAATTGGTTGGCTGGTTGGCAACCTTAGCACGGTATTGTTCCTTGTATATTTGAAATGTATATCATATGTCTTTGTTATTGAGAACTCTT
GTACGATTCTATATAATTTGTATATATCCTTTGCATGGCTTCATTTTAA

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPSSMSLITNRKFTGSVNKPVIVSTSSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALKYNDRPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFSMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

PI0010378 (gene) of Melon (PI 482460) v1 genome