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PI0010402 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010402
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr04:27833254..27833556
RNA-Seq ExpressionPI0010402
SyntenyPI0010402
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019183635.1 PREDICTED: uncharacterized protein LOC109178455 [Ipomoea nil]1.2e-2367.9Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAK+DII+ L YPT ++++RSFLG  GFYRRFIKDFSKIALPL  LLQK+ PF  D+KCK AF+ELK+ L S PI+Q PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]2.3e-2465.43Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAK+D+I+ L YPTC++DIRSFLG  GFYRRFIKDFS+IA PL  LLQKD+PF  D +C++AFN LK++L + PI+Q+PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]1.2e-2367.9Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAKIDII  L YP+C+KD+RSFLG  GFYRRFI+DFSKIALPL+ LLQKD+ FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]1.2e-2367.9Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAKIDII  L YP+C+KD+RSFLG  GFYRRFI+DFSKIALPL+ LLQKD+ FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]8.8e-2467.9Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAKIDII  L YP+C+KD+RSFLG  GFYRRFI+DFSKIALPL+ LLQKD+ FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein2.1e-2367.9Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAKI++I  L YPTC+K+IRSFLG  GFYRRFIKDFSKIA PL+ LLQKD  F  +E C+ AF+ELK RL S PIL +PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)1.8e-2265.43Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        D AKI++   L YP+C+ +IRSFLG  GFY RFIKDFSKIALPL++LLQKD+ F  D+KCKKAF+ LK  L STPI+Q PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

A0A2U1NRI2 Reverse transcriptase1.4e-2266.67Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        DKAK+D+I KL  PT +K IRSFLG  GFYRRFIKDFSKIA PLT LL+KD+PF  D++C+KAF  LK++L  TPI+ SPN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

A0A371IAU2 Retrovirus-related Pol polyprotein (Fragment)1.4e-2265.43Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        D+ KID+I  L  PT L+++RSFLG   FYRRFIKDFSKIALPL+ LLQKD+ F+ D+ C  AF ELK+RL STPILQ+PN
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)2.1e-2365.43Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        D AKID+I  L +PTC+++IRSFLG  GFYRRFIKDFSKIALPL++LLQKD+ F  D+KCK+AF+ LK+ L STP++Q P+
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein4.9e-0937.84Show/hide
Query:  IQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        + K+  PT  + +R FLG+ GF R +I  F+ +A PL  L ++ +PF+  E+ +KAF+ +K+ L S P L  P+
Subjt:  IQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-1043.04Show/hide
Query:  KIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPF-VIDEKCKKAFNELKQRLASTPILQSPN
        KI+ IQK   PT  K+I++FLG TG+YR+FI +F+ IA P+T  L+K+M     + +   AF +LK  ++  PIL+ P+
Subjt:  KIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPF-VIDEKCKKAFNELKQRLASTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4123.7e-0937.04Show/hide
Query:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        D  K D+IQ    P      R F+    +YRRFIK+F+  +  +T L +K++PF   ++C+KAF  LK +L +  +LQ P+
Subjt:  DKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

P92523 Uncharacterized mitochondrial protein AtMg008606.4e-0939.29Show/hide
Query:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        VS D AK++ +     P    ++R FLG TG+YRRF+K++ KI  PLT LL+K+      E    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.2e-1135.11Show/hide
Query:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQ-----------KDMPFVIDEKCKKAFNELKQRLASTPILQSP
        +  D  K+  I ++  PT +K+++ FLG T +YR+FI+D++K+A PLT+L +             +P  +DE   ++FN+LK  L S+ IL  P
Subjt:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQ-----------KDMPFVIDEKCKKAFNELKQRLASTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.5e-1039.29Show/hide
Query:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN
        VS D AK++ +     P    ++R FLG TG+YRRF+K++ KI  PLT LL+K+      E    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCACATGATAAAGCAAAAATTGACATTATCCAAAAATTGTCATATCCTACCTGTCTAAAAGACATTAGATCTTTTCTTGGTAGCACCGGTTTTTATAGAAGATT
CATTAAAGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCCTACAAAAAGACATGCCATTTGTGATAGATGAGAAATGCAAAAAAGCGTTCAATGAACTCAAACAAA
GGTTAGCTTCTACTCCTATACTTCAATCTCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCACATGATAAAGCAAAAATTGACATTATCCAAAAATTGTCATATCCTACCTGTCTAAAAGACATTAGATCTTTTCTTGGTAGCACCGGTTTTTATAGAAGATT
CATTAAAGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCCTACAAAAAGACATGCCATTTGTGATAGATGAGAAATGCAAAAAAGCGTTCAATGAACTCAAACAAA
GGTTAGCTTCTACTCCTATACTTCAATCTCCTAATTGA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDIIQKLSYPTCLKDIRSFLGSTGFYRRFIKDFSKIALPLTSLLQKDMPFVIDEKCKKAFNELKQRLASTPILQSPN