CuGenDBv2

Gene ID	PI0010443
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr11:19260931..19261212
RNA-Seq Expression	PI0010443
Synteny	PI0010443
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AVM82047.1 ribosomal protein L23 [Adenocalymma acutissimum]

6.0e-42

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTE+KHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYRHMIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

QHE64999.1 ribosomal protein L23 [Coffea benghalensis var. bababudanii]

2.3e-41

92.47

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYT NVE RSTRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

YP_003359400.1 ribosomal protein L23 [Olea europaea]

3.0e-41

92.47

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

YP_009262332.1 ribosomal protein L23 [Spondias tuberosa]

1.0e-41

93.55

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

YP_009937527.1 ribosomal protein L23 [Salvia digitaloides]

1.8e-41

92.47

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTE+KHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A1Z1G988 50S ribosomal protein L23, chloroplastic

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

A0A2P1GAS3 50S ribosomal protein L23, chloroplastic

2.9e-42

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTE+KHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYRHMIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

A0A2P1GG18 50S ribosomal protein L23, chloroplastic

2.9e-42

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTE+KHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYRHMIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

A0A2P1H647 50S ribosomal protein L23, chloroplastic

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

A0A6G7IX01 50S ribosomal protein L23, chloroplastic

5.0e-42

93.55

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

5.1e-44

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

1.5e-43

91.4

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLG NQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

1.5e-43

91.4

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGP MGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

3.9e-44

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

3.9e-44

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVE  STRTEIKHWVELFFGVKVIAMNSH+LPGKGRRMGPIMGHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

7.6e-43

88.17

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYT NVE  STRTEIKHWVELFFGVKVIAMNSH+LPGK +RMGPI+GHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

ATCG01300.1 ribosomal protein L23

7.6e-43

88.17

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYT NVE  STRTEIKHWVELFFGVKVIAMNSH+LPGK +RMGPI+GHTMHYR MIITLQPGYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAAACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTTGAATGGAGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCAACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGAC
ATATGATCATTACGCTTCAACCGGGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDGIKYAVFTNKSIRLLGKNQYTSNVEWRSTRTEIKHWVELFFGVKVIAMNSHQLPGKGRRMGPIMGHTMHYRHMIITLQPGYSTRPLRKKRT

PI0010443 (gene) of Melon (PI 482460) v1 genome