CuGenDBv2

Gene ID	PI0010493
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	30S ribosomal protein S18, chloroplastic
Genome location	tig00003626:1032784..1033068
RNA-Seq Expression	PI0010493
Synteny	PI0010493
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR018275 - Ribosomal protein S18, conserved site IPR036870 - Ribosomal protein S18 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QTA71770.1 ribosomal protein S18 [Coriaria nepalensis]

1.8e-38

97.83

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

YP_004072484.1 ribosomal protein S18 [Corynocarpus laevigatus]

1.8e-38

97.83

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

YP_009575620.1 ribosomal protein S18 [Pyrus ussuriensis]

3.1e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR+FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

YP_009582194.1 ribosomal protein S18 [Bixa orellana]

3.1e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPP+QSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

YP_010040089.1 ribosomal protein S18 [Neillia incisa]

3.1e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR+FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

TrEMBL top hits

e value

%identity

Alignment

A0A481YMA7 30S ribosomal protein S18, chloroplastic

1.5e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPP+QSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

A0A7T6ZU27 Ribosomal protein S18

1.5e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR+FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

A0A7T6ZU85 Ribosomal protein S18

1.5e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR+FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

A0A7T7CNH5 Ribosomal protein S18

1.5e-38

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR+FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

E5KUB8 30S ribosomal protein S18, chloroplastic

8.9e-39

97.83

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

SwissProt top hits

e value

%identity

Alignment

A0ZZ57 30S ribosomal protein S18, chloroplastic

7.0e-41

96.74

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSEST R
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

Q09WZ5 30S ribosomal protein S18, chloroplastic

3.5e-40

95.65

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI  LLPFLNNEK+FERSEST R
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

Q2L928 30S ribosomal protein S18, chloroplastic

3.5e-40

95.65

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI S LPFLNNEK+FERSEST R
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

Q49KX7 30S ribosomal protein S18, chloroplastic

2.0e-40

96.7

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTA
        M+KSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNNEK+FERSESTA
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTA

Q68RY4 30S ribosomal protein S18, chloroplastic

7.7e-40

94.57

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        MDKSKR FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARI SLLPFLNN+K+FER+ESTAR
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

1.4e-04

42.86

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Query:  DYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPF
        D+RN+  ++ FI+E G I+ R+   ++ K QR I   IK AR F L+PF
Subjt:  DYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPF

ATCG00650.1 ribosomal protein S18

4.7e-40

92.39

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Query:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR
        M+KSKRLF KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQRLITIAIKQARI SLLPFLNN+K+FERSEST R
Subjt:  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTAR

Sequences

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CDS sequence

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ATGGATAAATCCAAGCGACTCTTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTCTCTT
TGTTACCTTTTCTTAATAATGAGAAAGAATTTGAAAGAAGCGAGTCGACCGCTAGAAGGTCTTAG

mRNA sequence

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Protein sequence

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MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIFSLLPFLNNEKEFERSESTARRS

PI0010493 (gene) of Melon (PI 482460) v1 genome