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PI0010521 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010521
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:9817400..9818823
RNA-Seq ExpressionPI0010521
SyntenyPI0010521
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.0e-6570.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDK P++IE+ N++RKYDP+ NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KLPAQPD+ANVS ISLRSGK L+TP ++EKKVTS  + L + +E KEEKVETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-6570.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDK P++IE+ N+++KYDPH NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KL AQPDHANVSVISLRS K L+TP ++EKKVTS P+ L + +E KEEK ETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-6570.11Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKYP++IE+ N++R+YDPH NTYNSGWRDNP LRW NDNQ+  QA S+SSNQGTNLED++KA+A NTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KLPAQP+HANVS ISLRSGK L+TP ++EKKVTS  + L + +E KEE VETN  PSN    K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6671.58Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+K P++IE+ N++R+YDPHSNTYNSGWRDNPNLRW NDNQ+ +QA S+SSNQGTNLED++KA+ATNTLSFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQN

Query:  EMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
        EMKQQ++ LTT I K++GK KLPAQ DHANVS ISLRSGK L+TP ++EKKVTS P+ L + +E KEEKVETN  PSNS   K
Subjt:  EMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.0e-6570.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDK P++IE+ N+++KYDPH NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KL AQPDHANVSVISLRS K L+TP ++EKKVTS P+ L + +E KEEK ETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919109.9e-6670.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDK P++IE+ N+++KYDPH NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KL AQPDHANVSVISLRS K L+TP ++EKKVTS P+ L + +E KEEK ETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

A0A5A7VE49 Retrotransposon gag protein9.9e-6670.11Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKYP++IE+ N++R+YDPH NTYNSGWRDNP LRW NDNQ+  QA S+SSNQGTNLED++KA+A NTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KLPAQP+HANVS ISLRSGK L+TP ++EKKVTS  + L + +E KEE VETN  PSN    K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

A0A5A7VQ60 Retrotransposon gag protein1.5e-6671.58Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+K P++IE+ N++R+YDPHSNTYNSGWRDNPNLRW NDNQ+ +QA S+SSNQGTNLED++KA+ATNTLSFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQN

Query:  EMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
        EMKQQ++ LTT I K++GK KLPAQ DHANVS ISLRSGK L+TP ++EKKVTS P+ L + +E KEEKVETN  PSNS   K
Subjt:  EMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

A0A5D3DCG3 Retrotransposon gag protein9.9e-6670.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDK P++IE+ N+++KYDPH NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KL AQPDHANVSVISLRS K L+TP ++EKKVTS P+ L + +E KEEK ETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

E5GBZ4 Retrotransposon gag protein9.9e-6670.65Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDK P++IE+ N++RKYDP+ NTYNSGWRDNPNLRW NDNQ+ +QA  +SSNQGTNLED++KA+ATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQ

Query:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK
         EMKQQ++ LTT I K++GK KLPAQPD+ANVS ISLRSGK L+TP ++EKKVTS  + L + +E KEEKVETN  PSNS   K
Subjt:  NEMKQQISHLTTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTGAAAGTCGCTAAGTGTGGGGTATGCGGCTTAGTTGGACATCCAAATGATAAGTACCCAGACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCTCATAGTAATACTTACAATTCTGGTTGGAGAGACAACCCAAATCTAAGATGGGAAAACGACAACCAAAGGCCTTCACAAG
CAACTTCTTCTTCCTCTAACCAAGGTACAAATCTAGAAGATTTAGTAAAAGCAATAGCTACTAATACCCTCTCTTTCCAAAATGAAATGAAGCAACAAATTTCTCATCTT
ACAACCACAATTGGTAAGTTAGAAGGAAAATGCAAACTTCCGGCCCAACCGGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAAACTCTTGAAACCCCTCC
AAGTGAAGAAAAGAAGGTAACTTCCATCCCTATCCTTCTTGAAAATAATGATGAAAAAAAGGAAGAAAAAGTTGAAACAAATGCTTTACCATCCAATTCTAATAAAGGAA
AAGGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTGAAAGTCGCTAAGTGTGGGGTATGCGGCTTAGTTGGACATCCAAATGATAAGTACCCAGACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCTCATAGTAATACTTACAATTCTGGTTGGAGAGACAACCCAAATCTAAGATGGGAAAACGACAACCAAAGGCCTTCACAAG
CAACTTCTTCTTCCTCTAACCAAGGTACAAATCTAGAAGATTTAGTAAAAGCAATAGCTACTAATACCCTCTCTTTCCAAAATGAAATGAAGCAACAAATTTCTCATCTT
ACAACCACAATTGGTAAGTTAGAAGGAAAATGCAAACTTCCGGCCCAACCGGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAAACTCTTGAAACCCCTCC
AAGTGAAGAAAAGAAGGTAACTTCCATCCCTATCCTTCTTGAAAATAATGATGAAAAAAAGGAAGAAAAAGTTGAAACAAATGCTTTACCATCCAATTCTAATAAAGGAA
AAGGGGATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWENDNQRPSQATSSSSNQGTNLEDLVKAIATNTLSFQNEMKQQISHL
TTTIGKLEGKCKLPAQPDHANVSVISLRSGKTLETPPSEEKKVTSIPILLENNDEKKEEKVETNALPSNSNKGKGD