CuGenDBv2

Gene ID	PI0010565
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	tig00003622:47389..47610
RNA-Seq Expression	PI0010565
Synteny	PI0010565
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007066 - RNA polymerase Rpb1, domain 3 IPR042102 - RNA polymerase Rpb1, domain 3 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

APW82621.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]

8.7e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

YP_004841773.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]

8.7e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

YP_009420784.1 RNA polymerase beta'' subunit [Citrullus colocynthis]

8.7e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

YP_009431632.1 RNA polymerase beta'' subunit [Citrullus rehmii]

8.7e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

YP_009934605.1 RNA polymerase beta'' subunit [Polygala tenuifolia]

6.6e-28

94.44

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAEGA+LVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LFL6 DNA-directed RNA polymerase

4.2e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

A0A1X9Q1J9 DNA-directed RNA polymerase subunit beta''

4.2e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

A0A249RXP5 DNA-directed RNA polymerase subunit beta''

4.2e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

A0A249RZW9 DNA-directed RNA polymerase subunit beta''

4.2e-28

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

A0A7H1AFY3 DNA-directed RNA polymerase subunit beta''

3.2e-28

94.44

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAEGA+LVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

SwissProt top hits

e value

%identity

Alignment

A8SE78 DNA-directed RNA polymerase subunit beta''

1.6e-29

91.67

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNK IDGTA+K LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Q06H07 DNA-directed RNA polymerase subunit beta''

9.6e-30

91.67

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTA+K LISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Q09G56 DNA-directed RNA polymerase subunit beta''

1.6e-29

91.67

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNK IDGTA+K LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Q4VZP3 DNA-directed RNA polymerase subunit beta''

1.1e-30

95.83

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE ADLVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Q9THV5 DNA-directed RNA polymerase subunit beta''

9.6e-30

93.06

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Query:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MEVLMAE A+LVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

8.4e-29

92.65

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Query:  MAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK
        MAE A+LVFHNKVIDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSK
Subjt:  MAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSK

Sequences

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CDS sequence

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ATGGAGGTACTTATGGCGGAAGGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAAGGACTTATTAGCAGATTAATAGATCACTTCGGAATGGC
ATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTCTGATCTTTTAACAATCCCTTCTAAGGTCT
AA

mRNA sequence

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Protein sequence

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MEVLMAEGADLVFHNKVIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGISDLLTIPSKV

PI0010565 (gene) of Melon (PI 482460) v1 genome