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PI0010648 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010648
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranscription factor PRE6-like
Genome locationchr03:6819279..6820702
RNA-Seq ExpressionPI0010648
SyntenyPI0010648
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]4.2e-3894.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]2.2e-3997.92Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]1.2e-3290.62Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]2.6e-3289.58Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]7.9e-3794.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS  +PLISDDQI+DLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein2.0e-3894.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A1S3CPL2 transcription factor PRE6-like1.1e-3997.92Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like1.1e-3997.92Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like5.7e-3390.62Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like5.7e-3390.62Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE42.6e-2268.09Show/hide
Query:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Subjt:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q8GW32 Transcription factor PRE68.2e-2980.85Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9CA64 Transcription factor PRE32.3e-2370.21Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9FLE9 Transcription factor PRE11.4e-2364.58Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q9LJX1 Transcription factor PRE51.8e-2364.58Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.8e-3080.85Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.6e-2470.21Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.3e-2464.58Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT3G47710.1 BANQUO 31.8e-2368.09Show/hide
Query:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Subjt:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein9.6e-2564.58Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATCCCCGA
GCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAAGTGGATGATTTAAGTGAGCGAT
TGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTGCCATTATCAGGAGTTTATTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTC
ATCCCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAAGTGGATGATTTAAG
TGAGCGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTGCCATTATCAGGAGTTTATTTATGTAAAAAAACCATATAAATAACCACAATTTCCCAA
CCCCATAATTAATAATTACGACGTCGTTTCCTTTTTAATAATTTCTTATTTTTCATTTTCCTCTCTTTATATATAATATAATATGTGTATGATATTTAAATTATTATTTA
GCTAGGGCTTTTTTGGCCAATGTATTAGGCCACTACGCAGAAGGGTGTGCTATATTTTATACATAATATAACACCTCTTTTGAGCAGAGAGTTTGTAGTACCTTTGACTT
TTATAATAT
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM