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PI0010762 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010762
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr08:13560867..13568892
RNA-Seq ExpressionPI0010762
SyntenyPI0010762
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]7.7e-3359.01Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP A VDV   LVKS+PDLKL        RS+AE EACLSGPLFIKPSPRA VDV S LVKS+  L+L  KP YQ       
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRIQYLSSLALEL
                E EA LSGPL  K S R ++  F   VKS+P L+LR KSV+++ YLS+L LEL
Subjt:  ALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRIQYLSSLALEL

KAA0042506.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]1.8e-2956.13Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK--------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKP+PG  V + S LVKS+PDLKLRSK        AE EACLS PLFIKPSP A VD  S LVKS+  L+L  KP YQ       
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK--------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLSTKLSP-RELRSFRMFVKSNPVLELRSKSVHRIQYLS
               AEVEA LS PL  K SP  ++ +F   VKS+P L+LR K  +R+ YLS
Subjt:  ALELSPGAEVEAYLSGPLSTKLSP-RELRSFRMFVKSNPVLELRSKSVHRIQYLS

KAA0060419.1 putative RNA-directed DNA polymerase [Cucumis melo var. makuwa]1.2e-3054.8Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK------------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHY
        RSEAEVEACLSGPLFIKPSP A VDV   LVKS+PDLKLR K            AE EACL GPLFIKPSPRA+VDV S LVKS+  L+L  KP YQ  +
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK------------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHY

Query:  LPSLALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRI-QYLSSLALELST--ARLLPHF
                   AE EA LSGPL  K SPR ++  F   VKS+P L+LR K V+++  + SS    LST    +LP F
Subjt:  LPSLALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRI-QYLSSLALELST--ARLLPHF

KAA0067952.1 uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa]2.8e-2755.06Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP A VDV S LVKS+PDLKL        RS+AE EACLSGPLFIKPSPR  VDV   LVKS+  L+L  KP YQV YL +L
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLS--TKLSPRELRSFRMFVKSNPVLEL--RSKSVHRIQYLS
        ALEL  G      L    S  T+L     R  R+  KS+ ++ L   S  + R+ Y S
Subjt:  ALELSPGAEVEAYLSGPLS--TKLSPRELRSFRMFVKSNPVLEL--RSKSVHRIQYLS

TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]1.8e-2669.23Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP   VDV S LVKS+PDLKL        RS+AE EACLSGPLFIKPSPRA VDV S LVK +  L+L SKP Y+V YL +L
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALEL
         LEL
Subjt:  ALEL

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H3.7e-3359.01Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP A VDV   LVKS+PDLKL        RS+AE EACLSGPLFIKPSPRA VDV S LVKS+  L+L  KP YQ       
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRIQYLSSLALEL
                E EA LSGPL  K S R ++  F   VKS+P L+LR KSV+++ YLS+L LEL
Subjt:  ALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRIQYLSSLALEL

A0A5A7TKN3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H8.6e-3056.13Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK--------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKP+PG  V + S LVKS+PDLKLRSK        AE EACLS PLFIKPSP A VD  S LVKS+  L+L  KP YQ       
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK--------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLSTKLSP-RELRSFRMFVKSNPVLELRSKSVHRIQYLS
               AEVEA LS PL  K SP  ++ +F   VKS+P L+LR K  +R+ YLS
Subjt:  ALELSPGAEVEAYLSGPLSTKLSP-RELRSFRMFVKSNPVLELRSKSVHRIQYLS

A0A5A7V3T7 Ribonuclease H6.0e-3154.8Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK------------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHY
        RSEAEVEACLSGPLFIKPSP A VDV   LVKS+PDLKLR K            AE EACL GPLFIKPSPRA+VDV S LVKS+  L+L  KP YQ  +
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSK------------AEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHY

Query:  LPSLALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRI-QYLSSLALELST--ARLLPHF
                   AE EA LSGPL  K SPR ++  F   VKS+P L+LR K V+++  + SS    LST    +LP F
Subjt:  LPSLALELSPGAEVEAYLSGPLSTKLSPR-ELRSFRMFVKSNPVLELRSKSVHRI-QYLSSLALELST--ARLLPHF

A0A5A7VHZ0 Uncharacterized protein1.4e-2755.06Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP A VDV S LVKS+PDLKL        RS+AE EACLSGPLFIKPSPR  VDV   LVKS+  L+L  KP YQV YL +L
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALELSPGAEVEAYLSGPLS--TKLSPRELRSFRMFVKSNPVLEL--RSKSVHRIQYLS
        ALEL  G      L    S  T+L     R  R+  KS+ ++ L   S  + R+ Y S
Subjt:  ALELSPGAEVEAYLSGPLS--TKLSPRELRSFRMFVKSNPVLEL--RSKSVHRIQYLS

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H8.9e-2769.23Show/hide
Query:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL
        RSEAE EACLSGPLFIKPSP   VDV S LVKS+PDLKL        RS+AE EACLSGPLFIKPSPRA VDV S LVK +  L+L SKP Y+V YL +L
Subjt:  RSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKL--------RSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSL

Query:  ALEL
         LEL
Subjt:  ALEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATGCCTTCTCAAGTTTGGTTAAATCGAACCCAGATCTGAAGCTGAGATCTGAAGCTGAGGTCGAAGCCTGTCTATCAGGTCCATTATTTATCAAACCTAGCCC
TGGAGCTATGGTTGATGTCCTCTCAAAATTGGTTAAATCGAACCCAGATCTGAAGCTGAGATCTAAAGCTGAGGTCGAAGCCTGTCTATCAGGTCCATTGTTTATCAAAC
CTAGCCCTAGAGCTATGGTGGATGTCCTCTCAAAATTGGTTAAATCGAACTCAGTTCTAGAGTTGTGGTCGAAGCCTACCTATCAGGTTCATTATCTACCAAGTCTAGCC
CTAGAGCTAAGTCCTGGAGCTGAGGTCGAAGCCTACCTATCAGGTCCATTATCTACCAAGCTTAGCCCTAGAGAGCTAAGGTCTTTCCGAATGTTTGTTAAATCGAACCC
AGTCCTAGAGCTGAGATCGAAGTCTGTCCATCGGATCCAATATCTATCAAGCTTAGCCCTAGAGCTAAGCACGGCACGACTTCTCCCTCATTTTCCTTTTCGTTCCGGCA
CAGCACGAGCACGGCTTCTCCCTCATTATCCTTTCCGTTCCGGCACAACACGAGCACGGCACGACACGGGCCTCCTTCTCCCTCATTTTCCTTTCCATTCTGGCATAGCA
CGAGCACGGGTTCTACTTTCCAGTTTCTGGCACGACATCGTTCTCCCTCCAGTTAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATGCCTTCTCAAGTTTGGTTAAATCGAACCCAGATCTGAAGCTGAGATCTGAAGCTGAGGTCGAAGCCTGTCTATCAGGTCCATTATTTATCAAACCTAGCCC
TGGAGCTATGGTTGATGTCCTCTCAAAATTGGTTAAATCGAACCCAGATCTGAAGCTGAGATCTAAAGCTGAGGTCGAAGCCTGTCTATCAGGTCCATTGTTTATCAAAC
CTAGCCCTAGAGCTATGGTGGATGTCCTCTCAAAATTGGTTAAATCGAACTCAGTTCTAGAGTTGTGGTCGAAGCCTACCTATCAGGTTCATTATCTACCAAGTCTAGCC
CTAGAGCTAAGTCCTGGAGCTGAGGTCGAAGCCTACCTATCAGGTCCATTATCTACCAAGCTTAGCCCTAGAGAGCTAAGGTCTTTCCGAATGTTTGTTAAATCGAACCC
AGTCCTAGAGCTGAGATCGAAGTCTGTCCATCGGATCCAATATCTATCAAGCTTAGCCCTAGAGCTAAGCACGGCACGACTTCTCCCTCATTTTCCTTTTCGTTCCGGCA
CAGCACGAGCACGGCTTCTCCCTCATTATCCTTTCCGTTCCGGCACAACACGAGCACGGCACGACACGGGCCTCCTTCTCCCTCATTTTCCTTTCCATTCTGGCATAGCA
CGAGCACGGGTTCTACTTTCCAGTTTCTGGCACGACATCGTTCTCCCTCCAGTTAGGTAA
Protein sequenceShow/hide protein sequence
MVDAFSSLVKSNPDLKLRSEAEVEACLSGPLFIKPSPGAMVDVLSKLVKSNPDLKLRSKAEVEACLSGPLFIKPSPRAMVDVLSKLVKSNSVLELWSKPTYQVHYLPSLA
LELSPGAEVEAYLSGPLSTKLSPRELRSFRMFVKSNPVLELRSKSVHRIQYLSSLALELSTARLLPHFPFRSGTARARLLPHYPFRSGTTRARHDTGLLLPHFPFHSGIA
RARVLLSSFWHDIVLPPVR