; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0010777 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010777
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:26387687..26393604
RNA-Seq ExpressionPI0010777
SyntenyPI0010777
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036824.1 uncharacterized protein E6C27_scaffold20G001240 [Cucumis melo var. makuwa]3.5e-7438.24Show/hide
Query:  ISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLD-PSSSHPSPLPDHQNTNVSTPIIDET
        I +P       + PS ++ S  P     P S SL A  P      I  +++++ ++ I +SR+  +F++ +  D P  + P P+ D        P    T
Subjt:  ISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLD-PSSSHPSPLPDHQNTNVSTPIIDET

Query:  FVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVS
           P +   S P++         +   + ++T +GR+K+ +++  VP+DG+SFHHE +V +WK+VVQRRIADE  +S  H SC++IM LI +A L  T+S
Subjt:  FVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVS

Query:  NLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITLR-DEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHK
        N+GPFYP+LIRE  VN+   F NPSS  Y  IH+RG  F +S   +N FL  T+  D  +  P  + LA  L+GG ++ WP NG  +AA LS+KY  LHK
Subjt:  NLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITLR-DEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHK

Query:  IGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPD
        IGI +W PS H+ ++S  L   ++ I     VD G+F  +QL RH+ S+ VK+PI LPRFF + LL  N  +L   +APGP P  +  SY+LFQG+HV D
Subjt:  IGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPD

Query:  IEHSIRPPSSN--LPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST
        I H +    S      TD   + D G  +   LA ++++ LT++S +L+  I+ LSERR  +D+++  ++ L PST
Subjt:  IEHSIRPPSSN--LPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST

KAA0067563.1 uncharacterized protein E6C27_scaffold485G00260 [Cucumis melo var. makuwa]2.7e-7438.7Show/hide
Query:  VPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLDPSSSHPSPLPDHQNTNVSTPIIDE
        VP      ++S    PS++ +SP  +PISD  +PS S ++    ++++    + +  +  PL  +                P    DH   N   P+ D 
Subjt:  VPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLDPSSSHPSPLPDHQNTNVSTPIIDE

Query:  TFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPV-PVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLST
                  SVP + P  +    +   + ++T +GR+K+PL++  V  VDG+SFH E +V +WK+VVQRRIAD+  +SD +HSC++IM LI +  L  T
Subjt:  TFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPV-PVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLST

Query:  VSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLN--ITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAI
        + ++G FYP+LIRE  VN+ A F +PSS DY  +H+RG  F++S   +N FL   +++   P   P+ + LAS L GG ++ WP NG + A  LSVKYAI
Subjt:  VSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLN--ITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAI

Query:  LHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAH
        LHKIGI SW PS H S+VS  L   ++ I     VD G F  +QL RH+ S+ VKLPI LPRFF   LL  N  +L  ++AP P P  L LSYRLFQG H
Subjt:  LHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAH

Query:  VPDIEHSIR-PPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST
        VPDI+H++       +  T        G  +   LA ++L+ L  +S SL+T I  +SERR  IDS++  ++   PS+
Subjt:  VPDIEHSIR-PPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST

TYJ96199.1 uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa]4.5e-7446.23Show/hide
Query:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        N   P+ D           SVP +  SS     + + + ++T +GR+K+PL++  VP+ G+SFHHE +V +WK+VVQRRIADE  +S+ HHSC++I+ LI
Subjt:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA
         +A L  T+SN+G  YPKLIR+  VN++A F +PSSPDY T+H+RG  F++SP  +N FL  ++++   P   P+ D LAS L+GG ++ W  +G + A 
Subjt:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA

Query:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS
         LSV YAILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  +QL RH+ S+ VKL I LPRFF + LL     +L  ++AP P P  L LS
Subjt:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS

Query:  YRLFQGAHVPDIEHSIRP
        YRLFQ +HVPDI+H + P
Subjt:  YRLFQGAHVPDIEHSIRP

TYK16303.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.2e-7236.07Show/hide
Query:  GPSKKASTSVSSPPMVTSPSPSVSI-VPHEVPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFS
        G     S+ V S     S +PS  + V  EVP     SS+ + S+ +     P P  +S P    L   S H       +  +S                
Subjt:  GPSKKASTSVSSPPMVTSPSPSVSI-VPHEVPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFS

Query:  TISFLDPSSSHPSPLPDHQNTNVSTPIIDETFVDPPTINTSVPNQVPSST----------PSNIRAKTKRV-STLSGRRKVPLHVNPVPVDGLSFHHESH
              P +S PS   D  +T+      DE +V P T   +VP    +S           PS+ R+  + V ST +GR+K+P +V  VP+DG+SFH E  
Subjt:  TISFLDPSSSHPSPLPDHQNTNVSTPIIDETFVDPPTINTSVPNQVPSST----------PSNIRAKTKRV-STLSGRRKVPLHVNPVPVDGLSFHHESH

Query:  VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITL-RDE
         HKW YVV+RRIADE+ + D ++S  AI+ LI   +L+ TVS +GPFYP+L+RE+ VN+ + F +PS+ +Y  +H+RG+ F++SP+ LNT+L ++L  D 
Subjt:  VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITL-RDE

Query:  PQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLP
            PTP+ LA ELTGG +  WP +G L  A L++KY+ILH+I I +W+PS H+ T+S  L H ++L+GTG  V+   F  + L RH+D++A+ +PIC P
Subjt:  PQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLP

Query:  RFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPDI--EHSIRPPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSER
        R    FLL    T L   +  G  P  + L   LFQG+++PDI  E    P  +++  T    T    L L  SL N +L  L ++S SL+  I DL++R
Subjt:  RFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPDI--EHSIRPPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSER

Query:  RKLIDSVVSSVRLLVPSTEEAPAD
        R ++D+V+  +R     +   P+D
Subjt:  RKLIDSVVSSVRLLVPSTEEAPAD

XP_008464590.1 PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo]4.5e-7446.23Show/hide
Query:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        N   P+ D           SVP +  SS     + + + ++T +GR+K+PL++  VP+ G+SFHHE +V +WK+VVQRRIADE  +S+ HHSC++I+ LI
Subjt:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA
         +A L  T+SN+G  YPKLIR+  VN++A F +PSSPDY T+H+RG  F++SP  +N FL  ++++   P   P+ D LAS L+GG ++ W  +G + A 
Subjt:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA

Query:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS
         LSV YAILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  +QL RH+ S+ VKL I LPRFF + LL     +L  ++AP P P  L LS
Subjt:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS

Query:  YRLFQGAHVPDIEHSIRP
        YRLFQ +HVPDI+H + P
Subjt:  YRLFQGAHVPDIEHSIRP

TrEMBL top hitse value%identityAlignment
A0A1S3CND8 uncharacterized protein LOC1035024362.2e-7446.23Show/hide
Query:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        N   P+ D           SVP +  SS     + + + ++T +GR+K+PL++  VP+ G+SFHHE +V +WK+VVQRRIADE  +S+ HHSC++I+ LI
Subjt:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA
         +A L  T+SN+G  YPKLIR+  VN++A F +PSSPDY T+H+RG  F++SP  +N FL  ++++   P   P+ D LAS L+GG ++ W  +G + A 
Subjt:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA

Query:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS
         LSV YAILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  +QL RH+ S+ VKL I LPRFF + LL     +L  ++AP P P  L LS
Subjt:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS

Query:  YRLFQGAHVPDIEHSIRP
        YRLFQ +HVPDI+H + P
Subjt:  YRLFQGAHVPDIEHSIRP

A0A5A7SZY3 Reverse transcriptase Ty1/copia-type domain-containing protein1.7e-7438.24Show/hide
Query:  ISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLD-PSSSHPSPLPDHQNTNVSTPIIDET
        I +P       + PS ++ S  P     P S SL A  P      I  +++++ ++ I +SR+  +F++ +  D P  + P P+ D        P    T
Subjt:  ISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLD-PSSSHPSPLPDHQNTNVSTPIIDET

Query:  FVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVS
           P +   S P++         +   + ++T +GR+K+ +++  VP+DG+SFHHE +V +WK+VVQRRIADE  +S  H SC++IM LI +A L  T+S
Subjt:  FVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVS

Query:  NLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITLR-DEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHK
        N+GPFYP+LIRE  VN+   F NPSS  Y  IH+RG  F +S   +N FL  T+  D  +  P  + LA  L+GG ++ WP NG  +AA LS+KY  LHK
Subjt:  NLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITLR-DEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHK

Query:  IGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPD
        IGI +W PS H+ ++S  L   ++ I     VD G+F  +QL RH+ S+ VK+PI LPRFF + LL  N  +L   +APGP P  +  SY+LFQG+HV D
Subjt:  IGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPD

Query:  IEHSIRPPSSN--LPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST
        I H +    S      TD   + D G  +   LA ++++ LT++S +L+  I+ LSERR  +D+++  ++ L PST
Subjt:  IEHSIRPPSSN--LPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST

A0A5A7VHK0 Uncharacterized protein1.3e-7438.7Show/hide
Query:  VPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLDPSSSHPSPLPDHQNTNVSTPIIDE
        VP      ++S    PS++ +SP  +PISD  +PS S ++    ++++    + +  +  PL  +                P    DH   N   P+ D 
Subjt:  VPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLDPSSSHPSPLPDHQNTNVSTPIIDE

Query:  TFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPV-PVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLST
                  SVP + P  +    +   + ++T +GR+K+PL++  V  VDG+SFH E +V +WK+VVQRRIAD+  +SD +HSC++IM LI +  L  T
Subjt:  TFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPV-PVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLST

Query:  VSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLN--ITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAI
        + ++G FYP+LIRE  VN+ A F +PSS DY  +H+RG  F++S   +N FL   +++   P   P+ + LAS L GG ++ WP NG + A  LSVKYAI
Subjt:  VSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLN--ITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAI

Query:  LHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAH
        LHKIGI SW PS H S+VS  L   ++ I     VD G F  +QL RH+ S+ VKLPI LPRFF   LL  N  +L  ++AP P P  L LSYRLFQG H
Subjt:  LHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAH

Query:  VPDIEHSIR-PPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST
        VPDI+H++       +  T        G  +   LA ++L+ L  +S SL+T I  +SERR  IDS++  ++   PS+
Subjt:  VPDIEHSIR-PPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPST

A0A5D3BB19 Uncharacterized protein2.2e-7446.23Show/hide
Query:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        N   P+ D           SVP +  SS     + + + ++T +GR+K+PL++  VP+ G+SFHHE +V +WK+VVQRRIADE  +S+ HHSC++I+ LI
Subjt:  NVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNPVPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA
         +A L  T+SN+G  YPKLIR+  VN++A F +PSSPDY T+H+RG  F++SP  +N FL  ++++   P   P+ D LAS L+GG ++ W  +G + A 
Subjt:  SQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFL--NITLRDEPQILPTPDELASELTGGMVTHWPSNGYLSAA

Query:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS
         LSV YAILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  +QL RH+ S+ VKL I LPRFF + LL     +L  ++AP P P  L LS
Subjt:  RLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLLTHNRTILHPNEAPGPSPSKLHLS

Query:  YRLFQGAHVPDIEHSIRP
        YRLFQ +HVPDI+H + P
Subjt:  YRLFQGAHVPDIEHSIRP

A0A5D3CWQ1 Gag-pol polyprotein1.6e-7236.07Show/hide
Query:  GPSKKASTSVSSPPMVTSPSPSVSI-VPHEVPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFS
        G     S+ V S     S +PS  + V  EVP     SS+ + S+ +     P P  +S P    L   S H       +  +S                
Subjt:  GPSKKASTSVSSPPMVTSPSPSVSI-VPHEVPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSLSALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFS

Query:  TISFLDPSSSHPSPLPDHQNTNVSTPIIDETFVDPPTINTSVPNQVPSST----------PSNIRAKTKRV-STLSGRRKVPLHVNPVPVDGLSFHHESH
              P +S PS   D  +T+      DE +V P T   +VP    +S           PS+ R+  + V ST +GR+K+P +V  VP+DG+SFH E  
Subjt:  TISFLDPSSSHPSPLPDHQNTNVSTPIIDETFVDPPTINTSVPNQVPSST----------PSNIRAKTKRV-STLSGRRKVPLHVNPVPVDGLSFHHESH

Query:  VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITL-RDE
         HKW YVV+RRIADE+ + D ++S  AI+ LI   +L+ TVS +GPFYP+L+RE+ VN+ + F +PS+ +Y  +H+RG+ F++SP+ LNT+L ++L  D 
Subjt:  VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITL-RDE

Query:  PQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLP
            PTP+ LA ELTGG +  WP +G L  A L++KY+ILH+I I +W+PS H+ T+S  L H ++L+GTG  V+   F  + L RH+D++A+ +PIC P
Subjt:  PQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLP

Query:  RFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPDI--EHSIRPPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSER
        R    FLL    T L   +  G  P  + L   LFQG+++PDI  E    P  +++  T    T    L L  SL N +L  L ++S SL+  I DL++R
Subjt:  RFFCNFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPDI--EHSIRPPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSER

Query:  RKLIDSVVSSVRLLVPSTEEAPAD
        R ++D+V+  +R     +   P+D
Subjt:  RKLIDSVVSSVRLLVPSTEEAPAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05360.1 Zinc knuckle (CCHC-type) family protein3.1e-0426.6Show/hide
Query:  NNQNKFRSSFPKRKDERNNE--FKNDEDFKCRECGGKGHYQSECATYLRRQRKGYSTTLSDESESSYDSEDEVRALVALSTLE-----------------
        N +N+    F   K + N E  +K+ +  +C EC G  H  SECA  ++ + K +   +  +SE   D  +E++ LVA +T E                 
Subjt:  NNQNKFRSSFPKRKDERNNE--FKNDEDFKCRECGGKGHYQSECATYLRRQRKGYSTTLSDESESSYDSEDEVRALVALSTLE-----------------

Query:  --TNKFSTG----------DDHSTSLPERKL-ENILEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKKLRNAKNENDRISKSVRMLNSGTKDLNH
          T+  +TG          DD   S+ + +  EN    ++  +KV+E+      E ++   ++++T+    +K   A ++ +   K++RMLN+GTK L H
Subjt:  --TNKFSTG----------DDHSTSLPERKL-ENILEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKKLRNAKNENDRISKSVRMLNSGTKDLNH

Query:  ILS
        ILS
Subjt:  ILS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTATGGATCTACATCAAATCGCAACAATCAAAATAAGTTTAGAAGTTCGTTCCCGAAAAGAAAAGATGAAAGGAATAATGAGTTCAAAAATGATGAAGACTTCAA
ATGCAGAGAGTGTGGTGGTAAAGGACATTATCAATCTGAATGTGCTACCTATTTGAGAAGGCAACGCAAAGGATACTCAACAACACTGTCTGATGAATCAGAATCAAGTT
ATGACTCTGAGGATGAGGTAAGAGCATTAGTTGCTTTATCCACGTTAGAAACTAATAAATTTTCTACAGGTGATGATCACTCCACTAGTCTTCCTGAAAGAAAACTTGAG
AATATCTTGGAGAAGTGGCAGGAAGATCTGAAAGTCATTGAACAGCAGAAAGAGAGAATTCTAGAACTGGTGGAAGATAACCATAGACTGTTGCAAACTATCTCAGATAT
CAAAAAGAAGTTGAGAAATGCAAAAAATGAAAATGACAGGATATCAAAATCTGTTCGCATGCTGAATTCAGGTACCAAAGATTTAAATCACATTTTGAGTTCAGATGAGT
CCACAGACGAGGATGATCTCATCTCATTCACTCCGAACAACAATCCTCAATCCAGAGATACTACAACTCAAATCACCTCAGAGTCTACACATGGATCATCAGGGTTTTTC
TGTATTAACAATATGGTTAGCACGAGACGTGGCTCTTACACTCCTCAAATTCCTGTAAAAAGGAATTCTGCGCAAAAGGATGTTGGTCTCTCTGTCAAAGACTTACGAAC
TAACAAGCATGGTGTTCATCTGCGTGGTCCCTCCAAGAAAGCTTCCACCTCTGTGTCTTCTCCTCCTATGGTAACTTCTCCTTCTCCATCTGTTTCAATTGTTCCCCATG
AGGTTCCTATATCTTCTCCTTCATCTTCAACTTCAGACACTTCTCATCCTAGTATTCATGCAACGTCTCCACCTCCTGCTCCTATCTCTGATCCCTTGTCTCCTAGCTTG
TCTGCCCTTTCTCCTCATCACAATGTTGCTGCTATCACTACATCTTCTTCTTCTTCTTCGCAAGACAACATTCCCCTGTCCCGGTTGCTTCATCGCTTTTCCACCATCTC
TTTCCTTGATCCTTCTTCTTCTCATCCGAGTCCTCTTCCTGATCATCAAAATACAAATGTCTCCACTCCCATTATTGATGAAACTTTCGTTGATCCTCCGACCATTAATA
CTTCTGTTCCTAACCAAGTTCCTTCCTCTACTCCTTCCAACATTAGAGCCAAGACTAAAAGAGTATCTACTCTTTCTGGTCGTCGAAAGGTTCCTTTGCATGTTAATCCT
GTTCCCGTTGATGGCCTTTCCTTCCATCATGAGTCGCATGTACACAAATGGAAATATGTGGTACAACGGCGTATTGCTGATGAGTCAGAAGTCTCTGATGATCATCATTC
CTGTCTGGCCATTATGACTCTTATATCGCAAGCTAAGCTTCTATCTACTGTCTCTAATCTTGGCCCTTTTTATCCTAAATTAATTCGGGAAATGTTTGTTAACATTGCCG
CTTCTTTTGAAAATCCCAGCAGCCCGGATTATCATACTATTCATGTCCGAGGAATGCCCTTCTCGGTTTCTCCTGATTCCTTAAATACTTTCCTTAACATTACTCTTCGT
GATGAACCCCAAATCTTGCCTACCCCCGATGAGCTTGCCTCCGAGTTAACAGGAGGAATGGTAACTCACTGGCCTTCTAATGGCTATCTTTCTGCAGCTCGTCTCAGTGT
TAAGTATGCCATTCTTCATAAGATCGGAATCCATAGTTGGCTTCCTTCTCGTCATTCTTCAACTGTGTCCCAAGTCCTGGCTCATTTAATTTTTCTTATTGGAACAGGCA
AACCTGTTGACTTTGGCTCATTTACTGTCAGTCAATTAAAACGCCATATCGATTCCTATGCAGTCAAGCTTCCTATTTGTTTGCCCCGATTCTTCTGTAACTTCCTTCTC
ACCCACAATCGCACCATTCTTCACCCAAATGAGGCTCCTGGTCCTTCTCCCTCCAAGCTCCATTTAAGTTATCGTCTATTTCAAGGAGCTCATGTACCTGATATTGAGCA
TTCTATTCGTCCTCCGTCTTCTAACCTGCCTCCCACTGATAAGCTGAGAACTCCTGACGGTGGTTTATTGCTTCCTCCTTCATTAGCAAATCAAGTTCTTCATGTCCTGA
CCTCTAAATCTCACAGCCTCAGCACTATAATTCATGATCTTTCAGAGAGACGAAAGCTCATTGACTCTGTTGTCTCATCTGTTCGGTTGCTGGTTCCTTCCACTGAGGAA
GCTCCTGCTGATCAACCTAGCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTATGGATCTACATCAAATCGCAACAATCAAAATAAGTTTAGAAGTTCGTTCCCGAAAAGAAAAGATGAAAGGAATAATGAGTTCAAAAATGATGAAGACTTCAA
ATGCAGAGAGTGTGGTGGTAAAGGACATTATCAATCTGAATGTGCTACCTATTTGAGAAGGCAACGCAAAGGATACTCAACAACACTGTCTGATGAATCAGAATCAAGTT
ATGACTCTGAGGATGAGGTAAGAGCATTAGTTGCTTTATCCACGTTAGAAACTAATAAATTTTCTACAGGTGATGATCACTCCACTAGTCTTCCTGAAAGAAAACTTGAG
AATATCTTGGAGAAGTGGCAGGAAGATCTGAAAGTCATTGAACAGCAGAAAGAGAGAATTCTAGAACTGGTGGAAGATAACCATAGACTGTTGCAAACTATCTCAGATAT
CAAAAAGAAGTTGAGAAATGCAAAAAATGAAAATGACAGGATATCAAAATCTGTTCGCATGCTGAATTCAGGTACCAAAGATTTAAATCACATTTTGAGTTCAGATGAGT
CCACAGACGAGGATGATCTCATCTCATTCACTCCGAACAACAATCCTCAATCCAGAGATACTACAACTCAAATCACCTCAGAGTCTACACATGGATCATCAGGGTTTTTC
TGTATTAACAATATGGTTAGCACGAGACGTGGCTCTTACACTCCTCAAATTCCTGTAAAAAGGAATTCTGCGCAAAAGGATGTTGGTCTCTCTGTCAAAGACTTACGAAC
TAACAAGCATGGTGTTCATCTGCGTGGTCCCTCCAAGAAAGCTTCCACCTCTGTGTCTTCTCCTCCTATGGTAACTTCTCCTTCTCCATCTGTTTCAATTGTTCCCCATG
AGGTTCCTATATCTTCTCCTTCATCTTCAACTTCAGACACTTCTCATCCTAGTATTCATGCAACGTCTCCACCTCCTGCTCCTATCTCTGATCCCTTGTCTCCTAGCTTG
TCTGCCCTTTCTCCTCATCACAATGTTGCTGCTATCACTACATCTTCTTCTTCTTCTTCGCAAGACAACATTCCCCTGTCCCGGTTGCTTCATCGCTTTTCCACCATCTC
TTTCCTTGATCCTTCTTCTTCTCATCCGAGTCCTCTTCCTGATCATCAAAATACAAATGTCTCCACTCCCATTATTGATGAAACTTTCGTTGATCCTCCGACCATTAATA
CTTCTGTTCCTAACCAAGTTCCTTCCTCTACTCCTTCCAACATTAGAGCCAAGACTAAAAGAGTATCTACTCTTTCTGGTCGTCGAAAGGTTCCTTTGCATGTTAATCCT
GTTCCCGTTGATGGCCTTTCCTTCCATCATGAGTCGCATGTACACAAATGGAAATATGTGGTACAACGGCGTATTGCTGATGAGTCAGAAGTCTCTGATGATCATCATTC
CTGTCTGGCCATTATGACTCTTATATCGCAAGCTAAGCTTCTATCTACTGTCTCTAATCTTGGCCCTTTTTATCCTAAATTAATTCGGGAAATGTTTGTTAACATTGCCG
CTTCTTTTGAAAATCCCAGCAGCCCGGATTATCATACTATTCATGTCCGAGGAATGCCCTTCTCGGTTTCTCCTGATTCCTTAAATACTTTCCTTAACATTACTCTTCGT
GATGAACCCCAAATCTTGCCTACCCCCGATGAGCTTGCCTCCGAGTTAACAGGAGGAATGGTAACTCACTGGCCTTCTAATGGCTATCTTTCTGCAGCTCGTCTCAGTGT
TAAGTATGCCATTCTTCATAAGATCGGAATCCATAGTTGGCTTCCTTCTCGTCATTCTTCAACTGTGTCCCAAGTCCTGGCTCATTTAATTTTTCTTATTGGAACAGGCA
AACCTGTTGACTTTGGCTCATTTACTGTCAGTCAATTAAAACGCCATATCGATTCCTATGCAGTCAAGCTTCCTATTTGTTTGCCCCGATTCTTCTGTAACTTCCTTCTC
ACCCACAATCGCACCATTCTTCACCCAAATGAGGCTCCTGGTCCTTCTCCCTCCAAGCTCCATTTAAGTTATCGTCTATTTCAAGGAGCTCATGTACCTGATATTGAGCA
TTCTATTCGTCCTCCGTCTTCTAACCTGCCTCCCACTGATAAGCTGAGAACTCCTGACGGTGGTTTATTGCTTCCTCCTTCATTAGCAAATCAAGTTCTTCATGTCCTGA
CCTCTAAATCTCACAGCCTCAGCACTATAATTCATGATCTTTCAGAGAGACGAAAGCTCATTGACTCTGTTGTCTCATCTGTTCGGTTGCTGGTTCCTTCCACTGAGGAA
GCTCCTGCTGATCAACCTAGCTCTTAA
Protein sequenceShow/hide protein sequence
MNYGSTSNRNNQNKFRSSFPKRKDERNNEFKNDEDFKCRECGGKGHYQSECATYLRRQRKGYSTTLSDESESSYDSEDEVRALVALSTLETNKFSTGDDHSTSLPERKLE
NILEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKKLRNAKNENDRISKSVRMLNSGTKDLNHILSSDESTDEDDLISFTPNNNPQSRDTTTQITSESTHGSSGFF
CINNMVSTRRGSYTPQIPVKRNSAQKDVGLSVKDLRTNKHGVHLRGPSKKASTSVSSPPMVTSPSPSVSIVPHEVPISSPSSSTSDTSHPSIHATSPPPAPISDPLSPSL
SALSPHHNVAAITTSSSSSSQDNIPLSRLLHRFSTISFLDPSSSHPSPLPDHQNTNVSTPIIDETFVDPPTINTSVPNQVPSSTPSNIRAKTKRVSTLSGRRKVPLHVNP
VPVDGLSFHHESHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLSTVSNLGPFYPKLIREMFVNIAASFENPSSPDYHTIHVRGMPFSVSPDSLNTFLNITLR
DEPQILPTPDELASELTGGMVTHWPSNGYLSAARLSVKYAILHKIGIHSWLPSRHSSTVSQVLAHLIFLIGTGKPVDFGSFTVSQLKRHIDSYAVKLPICLPRFFCNFLL
THNRTILHPNEAPGPSPSKLHLSYRLFQGAHVPDIEHSIRPPSSNLPPTDKLRTPDGGLLLPPSLANQVLHVLTSKSHSLSTIIHDLSERRKLIDSVVSSVRLLVPSTEE
APADQPSS