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PI0010876 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010876
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr02:18849138..18849936
RNA-Seq ExpressionPI0010876
SyntenyPI0010876
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]7.9e-4548.94Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+ D  DAE W NMLEK FDVM+CPEERKV+L TFLLQKEA                                    E KRDEFLG KQGSLSV EY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRSRDCPT--------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------P
        E+KY ELSRYADVIVASESDRCRS DCP+                                FTPG+N+S RQDFK+RSGGQ+ R +S            P
Subjt:  EKKYIELSRYADVIVASESDRCRSRDCPT--------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------P

Query:  SHSARSVAGPQAGQESVASVTKRTLCVSCGRNHRG
        S   RS    Q GQESVAS  ++T C SCGRNHRG
Subjt:  SHSARSVAGPQAGQESVASVTKRTLCVSCGRNHRG

KAA0045449.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-4448.93Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAE W NMLEK FDVM+C EERK++LATFLLQKEA                                    E KRDEFLG KQGSLSVAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRSRDCPT-------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------PS
        E+KY ELSRYADVIVASESDRCRS DCP+                               FTPG+N+S  QDFK+RSGGQ+   MS            PS
Subjt:  EKKYIELSRYADVIVASESDRCRSRDCPT-------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------PS

Query:  HSARSVAGPQAGQESVASVTKRTLCVSCGRNHR
           RS    Q GQES+AS  +RT C SCGRNHR
Subjt:  HSARSVAGPQAGQESVASVTKRTLCVSCGRNHR

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-4547.58Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAE W NMLEK FDVM+CPEERKV+LATFLLQKEA                                    E KRDEFLG KQGSL VAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP
        E+KY E+SRYADVIVA ESDRCRS                      R+   FTPG+N+S RQDFK+RSGG++ R MS          + PS   RS    
Subjt:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP

Query:  QAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP
        Q GQES+AS+ +RT C SCGRNHR                GHFK+D P
Subjt:  QAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-4141.7Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAE W NMLEK FDVM+CPEERKV+LATFLLQKEA                                    E KRDEFLG KQGSLSVAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRC---------------------------------------------------------RSRDCPTFTPGVNVSGRQDFK
        E+KY ELSRYADVI+ASESDRC                                                         R R+   FTPG+N+S RQDFK
Subjt:  EKKYIELSRYADVIVASESDRC---------------------------------------------------------RSRDCPTFTPGVNVSGRQDFK

Query:  SRSGGQSLRQMSLA----------PSHSARSVAGPQAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP
        +RSGGQ+ R +S            PS   RS    Q GQES+AS  +R  C SCGRNHR                GHFK+D P
Subjt:  SRSGGQSLRQMSLA----------PSHSARSVAGPQAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.5e-4349.19Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAEVW NML K FDVMSCP++RKV+LATFLLQKEA                                    E KRDEFL  KQGSLSVAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP
        E+KY ELSRYA VIVAS+SDRCRS                      R+   FTPGVNVSG QDFK RSGG+ LRQMS           A S S  SVA P
Subjt:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP

Query:  QAGQESVASVTKRTLCVSCGRNH----------------RGHFKRDYP
          GQESVAS ++RT CVSCG++H                 GHFK D P
Subjt:  QAGQESVASVTKRTLCVSCGRNH----------------RGHFKRDYP

TrEMBL top hitse value%identityAlignment
A0A5A7SRT9 Reverse transcriptase4.4e-4151.17Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEAE------------------------------------VKRDEFLGWKQGSLSVAEY
        +FEG+ D  DAE W NMLEK FDVM+CPEERKV+LA FLLQKEAE                                     KRDEFLG KQGSLSVAE 
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEAE------------------------------------VKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRSRDCPT-----------FTPGVNVSGRQDFKSRSGGQS----------LRQMSLAPSHSARSVAGPQAGQESVASVT
        E+KY ELSRYADVIVA ESD+ +SR   T           FTPG+N+S RQDFK+RS GQ+           RQ    PS   RS+   Q GQESVAS  
Subjt:  EKKYIELSRYADVIVASESDRCRSRDCPT-----------FTPGVNVSGRQDFKSRSGGQS----------LRQMSLAPSHSARSVAGPQAGQESVASVT

Query:  KRTLCVSCGRNHR
        +RT C+SCGRNHR
Subjt:  KRTLCVSCGRNHR

A0A5A7TA17 Putative gag-pol polyprotein3.8e-4548.94Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+ D  DAE W NMLEK FDVM+CPEERKV+L TFLLQKEA                                    E KRDEFLG KQGSLSV EY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRSRDCPT--------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------P
        E+KY ELSRYADVIVASESDRCRS DCP+                                FTPG+N+S RQDFK+RSGGQ+ R +S            P
Subjt:  EKKYIELSRYADVIVASESDRCRSRDCPT--------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------P

Query:  SHSARSVAGPQAGQESVASVTKRTLCVSCGRNHRG
        S   RS    Q GQESVAS  ++T C SCGRNHRG
Subjt:  SHSARSVAGPQAGQESVASVTKRTLCVSCGRNHRG

A0A5A7TW42 Reverse transcriptase3.2e-4448.93Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAE W NMLEK FDVM+C EERK++LATFLLQKEA                                    E KRDEFLG KQGSLSVAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRSRDCPT-------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------PS
        E+KY ELSRYADVIVASESDRCRS DCP+                               FTPG+N+S  QDFK+RSGGQ+   MS            PS
Subjt:  EKKYIELSRYADVIVASESDRCRSRDCPT-------------------------------FTPGVNVSGRQDFKSRSGGQSLRQMSLA----------PS

Query:  HSARSVAGPQAGQESVASVTKRTLCVSCGRNHR
           RS    Q GQES+AS  +RT C SCGRNHR
Subjt:  HSARSVAGPQAGQESVASVTKRTLCVSCGRNHR

A0A5A7UFH6 DNA/RNA polymerases superfamily protein1.0e-4547.58Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAE W NMLEK FDVM+CPEERKV+LATFLLQKEA                                    E KRDEFLG KQGSL VAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP
        E+KY E+SRYADVIVA ESDRCRS                      R+   FTPG+N+S RQDFK+RSGG++ R MS          + PS   RS    
Subjt:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP

Query:  QAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP
        Q GQES+AS+ +RT C SCGRNHR                GHFK+D P
Subjt:  QAGQESVASVTKRTLCVSCGRNHR----------------GHFKRDYP

A0A5D3CJX3 CCHC-type domain-containing protein1.2e-4349.19Show/hide
Query:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY
        +FEG+TD  DAEVW NML K FDVMSCP++RKV+LATFLLQKEA                                    E KRDEFL  KQGSLSVAEY
Subjt:  MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEA------------------------------------EVKRDEFLGWKQGSLSVAEY

Query:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP
        E+KY ELSRYA VIVAS+SDRCRS                      R+   FTPGVNVSG QDFK RSGG+ LRQMS           A S S  SVA P
Subjt:  EKKYIELSRYADVIVASESDRCRS----------------------RDCPTFTPGVNVSGRQDFKSRSGGQSLRQMS----------LAPSHSARSVAGP

Query:  QAGQESVASVTKRTLCVSCGRNH----------------RGHFKRDYP
          GQESVAS ++RT CVSCG++H                 GHFK D P
Subjt:  QAGQESVASVTKRTLCVSCGRNH----------------RGHFKRDYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGGTACCACAGATCTGACTGACGCTGAGGTTTGGTTTAATATGCTTGAAAAATATTTTGATGTGATGAGTTGTCCTGAGGAACGAAAAGTCAAATTGGCCAC
ATTCCTACTCCAGAAAGAGGCAGAGGTAAAGAGAGACGAGTTTCTAGGGTGGAAGCAAGGGTCACTTTCAGTGGCTGAGTATGAAAAGAAGTATATCGAGCTTTCACGGT
ATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGCCGAAGTAGAGACTGCCCTACGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTTAAGAGTCGATCT
GGTGGTCAATCATTGAGGCAGATGAGCTTAGCACCTAGTCATTCTGCTAGATCAGTAGCAGGACCGCAGGCAGGTCAGGAATCTGTCGCTAGCGTGACCAAGCGAACCCT
ATGTGTGAGTTGTGGCAGGAATCATCGAGGGCATTTCAAGAGAGATTATCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGGGTACCACAGATCTGACTGACGCTGAGGTTTGGTTTAATATGCTTGAAAAATATTTTGATGTGATGAGTTGTCCTGAGGAACGAAAAGTCAAATTGGCCAC
ATTCCTACTCCAGAAAGAGGCAGAGGTAAAGAGAGACGAGTTTCTAGGGTGGAAGCAAGGGTCACTTTCAGTGGCTGAGTATGAAAAGAAGTATATCGAGCTTTCACGGT
ATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGCCGAAGTAGAGACTGCCCTACGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTTAAGAGTCGATCT
GGTGGTCAATCATTGAGGCAGATGAGCTTAGCACCTAGTCATTCTGCTAGATCAGTAGCAGGACCGCAGGCAGGTCAGGAATCTGTCGCTAGCGTGACCAAGCGAACCCT
ATGTGTGAGTTGTGGCAGGAATCATCGAGGGCATTTCAAGAGAGATTATCCATAG
Protein sequenceShow/hide protein sequence
MFEGTTDLTDAEVWFNMLEKYFDVMSCPEERKVKLATFLLQKEAEVKRDEFLGWKQGSLSVAEYEKKYIELSRYADVIVASESDRCRSRDCPTFTPGVNVSGRQDFKSRS
GGQSLRQMSLAPSHSARSVAGPQAGQESVASVTKRTLCVSCGRNHRGHFKRDYP