CuGenDBv2

Gene ID	PI0010893
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr04:8567806..8568589
RNA-Seq Expression	PI0010893
Synteny	PI0010893
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.0e-75

54.23

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Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV FS+NC ++HILFADDIL+F+EDN+  + N             L  N  KS + P+NVSE R    A+ WGIS  SLP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S+ FW N+E K+ KKLN+WKY  ISKG +LTL+K+TLS+LPTYQLS+F+AP+ TC  IE+ WR+FLW    + +  HL+NW  VT  K 
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
        +GGLGI++V  TN A + KWLWR+ +EP++LWR++I  KYKG+Y G IP+    S+ KAP
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.7e-75

54.62

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW      +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+KV++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.9e-75

54.23

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Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.2e-75

54.23

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.8e-75

53.85

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GG+GI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein

4.8e-76

54.23

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV FS+NC ++HILFADDIL+F+EDN+  + N             L  N  KS + P+NVSE R    A+ WGIS  SLP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S+ FW N+E K+ KKLN+WKY  ISKG +LTL+K+TLS+LPTYQLS+F+AP+ TC  IE+ WR+FLW    + +  HL+NW  VT  K 
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
        +GGLGI++V  TN A + KWLWR+ +EP++LWR++I  KYKG+Y G IP+    S+ KAP
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein

1.4e-75

54.23

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein

8.2e-76

54.62

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW      +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+KV++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein

1.1e-75

54.23

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GGLGI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein

1.8e-75

53.85

Show/hide

Query:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK
        MDYLSRLL HL    +I GV F+N C ++H+LFADD+LIF+EDN   + N             L+FN +KSTI PIN+S  RT  IA+ +G     LP  
Subjt:  MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF------------LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTK

Query:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE
        YLGVPLGGNP S++FW+     +HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S    IE+HWRDFLW    +++  HL+NW+  T+PKE
Subjt:  YLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKE

Query:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
         GG+GI+K+++TN A +CKWLWR+ NE  SLW+K I AKY   + G IP  G+ SS  +P
Subjt:  KGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.1e-19

36.92

Show/hide

Query:  NSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVR
        N   F E +ER V  +++ W+   +S   +LTL KA LS++P + +S    P S  + +++  R FLW   A +K+ HLV W  V +PK++GGLG+   +
Subjt:  NSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVR

Query:  NTNFAFMCKWLWRFQNEPQSLWRKVIAAKY
        + N A + K  WR   E  SLW  V+  KY
Subjt:  NTNFAFMCKWLWRFQNEPQSLWRKVIAAKY

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.8e-13

28.57

Show/hide

Query:  GSLPTKYLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDT
        G+LP +YLG+PL     + + +  +  K+  ++  W   H+S   +L L+ + + +L  + +S F+ P++    I+     FLW       +   V W  
Subjt:  GSLPTKYLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDT

Query:  VTTPKEKGGLGINKVRNTN
        V TPK++GGLGI  ++  N
Subjt:  VTTPKEKGGLGINKVRNTN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACTATCTCAGCAGACTTCTTGACCATCTGATGCAAAATAATTCCATTGGAGGCGTTAGATTCAGCAATAATTGTTATCTCAACCACATTCTTTTTGCAGATGATAT
TTTGATCTTTATGGAAGACAACAATGATCAGATGAGAAACTTTCTCAGTTTCAACAGAACAAAATCTACCATCTTCCCAATCAATGTATCTGAGGAAAGAACATTAACAA
TTGCAACTGACTGGGGTATCTCTTGGGGTTCACTACCAACAAAATATCTTGGTGTCCCGCTGGGTGGTAATCCAAATTCAAAGGCATTCTGGGAAAACATTGAAAGGAAA
GTTCATAAGAAGCTTAATAGTTGGAAGTATACTCATATATCCAAAGGCAGAAAGTTAACTTTATTGAAGGCAACTCTTTCTAATCTGCCTACTTACCAACTCTCGATTTT
TAAAGCTCCAGCCTCTACTTGTGATATTATTGAGAGACATTGGCGTGATTTCCTTTGGCATGACAAAGCAAATGAAAAAAGAATGCATCTAGTCAACTGGGATACTGTCA
CTACTCCAAAGGAAAAAGGAGGCTTGGGGATCAATAAAGTTAGAAACACAAACTTTGCCTTTATGTGTAAATGGCTGTGGCGTTTTCAAAATGAACCACAGTCGTTGTGG
AGAAAAGTCATTGCTGCAAAATATAAAGGCCTGTATCTTGGCTCCATTCCTACTGAAGGGCAATACAGCAGTAAAAAAGCTCCTTAG

mRNA sequence

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Protein sequence

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MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNFLSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIERK
VHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLW
RKVIAAKYKGLYLGSIPTEGQYSSKKAP

PI0010893 (gene) of Melon (PI 482460) v1 genome