CuGenDBv2

Gene ID	PI0010939
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	tig00003626:1024407..1025153
RNA-Seq Expression	PI0010939
Synteny	PI0010939
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011262 - DNA-directed RNA polymerase, insert domain IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHB75996.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

5.6e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++    F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

QJF46416.1 RNA polymerase alpha subunit [Cucumis melo]

3.3e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F   NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

YP_004841815.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

3.3e-94

76.42

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Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F   NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

YP_009004075.1 RNA polymerase alpha subunit [Cucumis hystrix]

3.3e-94

76.42

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Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

YP_009346515.1 RNA polymerase alpha subunit [Cucumis x hytivus]

3.3e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1P4 DNA-directed RNA polymerase subunit alpha

1.6e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

A0A218KG62 DNA-directed RNA polymerase subunit alpha

1.6e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

A0A249RXS6 DNA-directed RNA polymerase subunit alpha

1.6e-94

76.42

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Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F   NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

A0A249RZB5 DNA-directed RNA polymerase subunit alpha

1.6e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F   NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

A0A286NFR2 DNA-directed RNA polymerase subunit alpha

1.6e-94

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F   NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

SwissProt top hits

e value

%identity

Alignment

Q09G14 DNA-directed RNA polymerase subunit alpha

4.4e-86

71.18

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREK+ VSTRTL+WKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGI+ESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTR+ASIC++GPG VTAQDII PPSVE VDNTQHIANLTEPI+ CIEL+IERNRGY ++TPNN +D SYP+DA+FMPVRN NHSIHSY NGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLF
        LEIWTNGSLTPKEALHEASRNLID    F
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLF

Q09WY5 DNA-directed RNA polymerase subunit alpha

1.2e-88

73.48

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        M +EK+ VSTR L+WKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+IERNRGY I+TPNN ++ SYP+DA+FMPVRN NHSIHSYVNGNENQE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFY
        LEIWTNGSLTPKEALHEASRNLID    F+
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFY

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

6.9e-87

69.51

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTL+WKCVESR DSK +    F                         E    TR KSEKIPH YSTI+GI+ESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGY I+T  N +D SYP+DA FMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEAL+EASRNLID LF+ ++  ++     F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

Q49KW6 DNA-directed RNA polymerase subunit alpha

1.6e-88

73.8

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESRADSK +    F                         E    TRAK EKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGYHI+TP N +D SYP+DA+FMPVRN NHSIHSY NGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLF
        LEIWTNGSLTPKEALHEASRNLID    F
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLF

Q4VZK3 DNA-directed RNA polymerase subunit alpha

4.3e-97

76.42

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSK +    F                         E    TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVRNVNHSIHSYVNGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN
        LEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + F + NN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

3.4e-81

66.38

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL
        MVREK++VSTRTL+WKCVES+ DSK +    F                         E    TRAKSE IPH YS I GIQESVHEI MNL EIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF
        YGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  NN +D SYP+DA+FMPV N NHSIHSY NGNE QE LF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLF

Query:  LEIWTNGSLTPKEALHEASRNLIDFLFLF
        LEIWTNGSLTPKEALH+ASRNLI+    F
Subjt:  LEIWTNGSLTPKEALHEASRNLIDFLFLF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTGTGAAAAGTATAT
TGACACACGTGCAAAATCTGAAAAAATCCCACATTCATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTCATGAATTTGAAAGAAATTGTATTGAGAA
GTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAG
CATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCC
TATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGAGACTTTTTCTCGAAATATGGACCAATGGAA
GTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATA
AACAATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVREKIRVSTRTLKWKCVESRADSKLIMDALFCEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQ
HIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEII
NN

PI0010939 (gene) of Melon (PI 482460) v1 genome