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PI0010944 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010944
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:11579748..11580884
RNA-Seq ExpressionPI0010944
SyntenyPI0010944
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033557.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-5762.91Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECP  P SNANR   + YD W+KANEKARVYIL SM++VLA+K ESLAT K I+ SL+GMF QP +SLRHE+IK+IYTK+MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVNG-------------KGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQNMKIVLGKGFMKERSLLR
        I EV+G             KGKEVE NVAT K KF RG SSK+K GPS PN +++K GK KTPK +K KK  EK KS       K+VL KGF+K RSL +
Subjt:  IVEVNG-------------KGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQNMKIVLGKGFMKERSLLR

Query:  LEEEKRSQLKQWD
        LE EK SQLKQW+
Subjt:  LEEEKRSQLKQWD

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-5866.67Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNAN+T  +AYD W+KANEKARVYIL SM++VLAKK+ESLATTK I+ SL+ MF QP +SLRHE+IK+IYTK+MKEGTS++ HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQN
        I EVN                GKGKEVE NVATTK+KF RG SSK+K+GPS PN ++KKK K KTPK +KEKK  EKGK YHCG+N
Subjt:  IVEVN----------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQN

KAA0046128.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-5651.48Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ   SN NRT REAYD W+KANEKARVYIL SM++VLAKK+ESLATTK I+ SL+G+F QP +SLRHE+IK+IYTK+MKEGTSVR +VLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I +VN                                                    GKGKEVE NVATTK+KF RG  SK+K  PS PN +++ KG  K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN-------------MKI-----VLGKGFMKERSLLRLEEEKRSQLKQWD
        TPK +KEKK  EKGK YHC +N              K+     VLGK F++ RSL +LE EK SQLKQW+
Subjt:  TPKMSKEKKAAEKGKSYHCGQN-------------MKI-----VLGKGFMKERSLLRLEEEKRSQLKQWD

TYK01653.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-5551.11Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNANR  ++AYD W+KAN K  VYIL SM++VLAKK+ESLATTK I+ SL+GMF QP +SLRHE+IK+IYTK+MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I EVN                                                    GKGKEVE NVATTK KF RG SS++K GPS  + +MKKKG  K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN---------------------MKIVLGKGFMKERSLLRLEEEKRSQLK
        TPK +K KK  EKGK YHCG+N                      K+VL K F++ RSLL+LE EK SQLK
Subjt:  TPKMSKEKKAAEKGKSYHCGQN---------------------MKIVLGKGFMKERSLLRLEEEKRSQLK

TYK22216.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-5753.56Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNANRT R+AYD WVKAN+KAR YIL +M++VLAKK+ESLA TK I+ SL+ MF QP +SLR+E+IK+IYTK MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I EVN                                                    GKGK+VE NVATTK+ FLRG SSK K G S PN Q+KKKGK K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN------------------MKIVLGKGFMKERSLLRLEEEKRSQLK
        TPK +K KKA EK K YHCGQN                     VLGKGF K RSLLRLE E+ SQLK
Subjt:  TPKMSKEKKAAEKGKSYHCGQN------------------MKIVLGKGFMKERSLLRLEEEKRSQLK

TrEMBL top hitse value%identityAlignment
A0A5A7TTD5 Gag/pol protein7.1e-5751.48Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ   SN NRT REAYD W+KANEKARVYIL SM++VLAKK+ESLATTK I+ SL+G+F QP +SLRHE+IK+IYTK+MKEGTSVR +VLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I +VN                                                    GKGKEVE NVATTK+KF RG  SK+K  PS PN +++ KG  K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN-------------MKI-----VLGKGFMKERSLLRLEEEKRSQLKQWD
        TPK +KEKK  EKGK YHC +N              K+     VLGK F++ RSL +LE EK SQLKQW+
Subjt:  TPKMSKEKKAAEKGKSYHCGQN-------------MKI-----VLGKGFMKERSLLRLEEEKRSQLKQWD

A0A5D3B6L3 Gag/pol protein6.4e-5862.91Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECP  P SNANR   + YD W+KANEKARVYIL SM++VLA+K ESLAT K I+ SL+GMF QP +SLRHE+IK+IYTK+MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVNG-------------KGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQNMKIVLGKGFMKERSLLR
        I EV+G             KGKEVE NVAT K KF RG SSK+K GPS PN +++K GK KTPK +K KK  EK KS       K+VL KGF+K RSL +
Subjt:  IVEVNG-------------KGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQNMKIVLGKGFMKERSLLR

Query:  LEEEKRSQLKQWD
        LE EK SQLKQW+
Subjt:  LEEEKRSQLKQWD

A0A5D3BPM3 Gag/pol protein1.3e-5551.11Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNANR  ++AYD W+KAN K  VYIL SM++VLAKK+ESLATTK I+ SL+GMF QP +SLRHE+IK+IYTK+MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I EVN                                                    GKGKEVE NVATTK KF RG SS++K GPS  + +MKKKG  K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN---------------------MKIVLGKGFMKERSLLRLEEEKRSQLK
        TPK +K KK  EKGK YHCG+N                      K+VL K F++ RSLL+LE EK SQLK
Subjt:  TPKMSKEKKAAEKGKSYHCGQN---------------------MKIVLGKGFMKERSLLRLEEEKRSQLK

A0A5D3CU35 Gag/pol protein2.2e-5866.67Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNAN+T  +AYD W+KANEKARVYIL SM++VLAKK+ESLATTK I+ SL+ MF QP +SLRHE+IK+IYTK+MKEGTS++ HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQN
        I EVN                GKGKEVE NVATTK+KF RG SSK+K+GPS PN ++KKK K KTPK +KEKK  EKGK YHCG+N
Subjt:  IVEVN----------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQN

A0A5D3DF48 Gag/pol protein6.4e-5853.56Show/hide
Query:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN
        EECPQ P SNANRT R+AYD WVKAN+KAR YIL +M++VLAKK+ESLA TK I+ SL+ MF QP +SLR+E+IK+IYTK MKEGTSVR HVLDM MHFN
Subjt:  EECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFN

Query:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK
        I EVN                                                    GKGK+VE NVATTK+ FLRG SSK K G S PN Q+KKKGK K
Subjt:  IVEVN----------------------------------------------------GKGKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEK

Query:  TPKMSKEKKAAEKGKSYHCGQN------------------MKIVLGKGFMKERSLLRLEEEKRSQLK
        TPK +K KKA EK K YHCGQN                     VLGKGF K RSLLRLE E+ SQLK
Subjt:  TPKMSKEKKAAEKGKSYHCGQN------------------MKIVLGKGFMKERSLLRLEEEKRSQLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCTGAGGAATGTCCTCAAGCCCCGATCTCTAATGCTAATCGAACTGTTCGAGAAGCATATGATCTTTGGGTAAAGGCTAATGAAAAAGCCCGTGTCTATATTCT
TACAAGCATGACAAATGTTTTGGCAAAGAAAAATGAATCCTTGGCCACGACTAAAGCGATTATCGGTTCATTAAGGGGAATGTTCGAGCAACCGTCATACTCCCTAAGAC
ACGAATCTATAAAACACATTTATACAAAGCAAATGAAGGAAGGGACCTCTGTTAGAGTACATGTCCTGGACATGACGATGCACTTCAACATCGTTGAAGTAAATGGTAAG
GGAAAGGAAGTGGAAGGAAATGTTGCTACCACTAAAAAGAAGTTTTTAAGAGGACAGTCCTCTAAAAACAAAATTGGACCATCAAATCCAAATGCTCAAATGAAAAAGAA
GGGTAAGGAAAAAACTCCCAAGATGAGCAAGGAAAAGAAAGCTGCAGAAAAAGGTAAAAGTTACCACTGCGGTCAGAACATGAAAATAGTTCTTGGAAAAGGCTTTATGA
AGGAGAGATCGCTCTTAAGGTTGGAAGAGGAGAAGAGGTCTCAGTTGAAGCAGTGGGATACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGCTGAGGAATGTCCTCAAGCCCCGATCTCTAATGCTAATCGAACTGTTCGAGAAGCATATGATCTTTGGGTAAAGGCTAATGAAAAAGCCCGTGTCTATATTCT
TACAAGCATGACAAATGTTTTGGCAAAGAAAAATGAATCCTTGGCCACGACTAAAGCGATTATCGGTTCATTAAGGGGAATGTTCGAGCAACCGTCATACTCCCTAAGAC
ACGAATCTATAAAACACATTTATACAAAGCAAATGAAGGAAGGGACCTCTGTTAGAGTACATGTCCTGGACATGACGATGCACTTCAACATCGTTGAAGTAAATGGTAAG
GGAAAGGAAGTGGAAGGAAATGTTGCTACCACTAAAAAGAAGTTTTTAAGAGGACAGTCCTCTAAAAACAAAATTGGACCATCAAATCCAAATGCTCAAATGAAAAAGAA
GGGTAAGGAAAAAACTCCCAAGATGAGCAAGGAAAAGAAAGCTGCAGAAAAAGGTAAAAGTTACCACTGCGGTCAGAACATGAAAATAGTTCTTGGAAAAGGCTTTATGA
AGGAGAGATCGCTCTTAAGGTTGGAAGAGGAGAAGAGGTCTCAGTTGAAGCAGTGGGATACTTAA
Protein sequenceShow/hide protein sequence
MTAEECPQAPISNANRTVREAYDLWVKANEKARVYILTSMTNVLAKKNESLATTKAIIGSLRGMFEQPSYSLRHESIKHIYTKQMKEGTSVRVHVLDMTMHFNIVEVNGK
GKEVEGNVATTKKKFLRGQSSKNKIGPSNPNAQMKKKGKEKTPKMSKEKKAAEKGKSYHCGQNMKIVLGKGFMKERSLLRLEEEKRSQLKQWDT