CuGenDBv2

Gene ID	PI0010959
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr11:19236284..19240098
RNA-Seq Expression	PI0010959
Synteny	PI0010959
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA+QTVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL++M+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.4e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

A0A5A7TU93 Gag/pol protein

1.4e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

A0A5A7TWB9 Gag/pol protein

1.4e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

A0A5A7V4M1 Gag/pol protein

1.4e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

A0A5D3CPJ6 Gag/pol protein

1.4e-66

69.27

Show/hide

Query:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG
        P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NG
Subjt:  PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNG

Query:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN
        A IDE +QVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSS G KK +KKKGG+G   
Subjt:  AAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDN

Query:  SLVKA
        +L  A
Subjt:  SLVKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCTCCTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGATCACTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATATCTGA
CGTACTGAGCAAGAAACATGAGTCTATAGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGACTATTAAAT
ACGTTTATAATACCCGTATGAAGAAAGGCCAATTAGAACATGTTCTCGACATGATGATCCAATTCAACGTGGCAGAAACGAACGGGGCGGCCATTGACGAGCAAACTCAG
GTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACTCTTCTTAACGAGTTGCAGAC
TTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCAT
CTTTTGGGACTAAAAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGACAATTCACTAGTGAAAGCAATACACTACATAAAATACACTCCTCAAGAAGCGAAACTATTT
GCTCTTTCAACTCTATCTTTCACAACATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSSPVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQLEHVLDMMIQFNVAETNGAAIDEQTQ
VSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDNSLVKAIHYIKYTPQEAKLF
ALSTLSFTT

PI0010959 (gene) of Melon (PI 482460) v1 genome