CuGenDBv2

Gene ID	PI0010960
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	SWIB domain-containing protein
Genome location	chr08:12142954..12147595
RNA-Seq Expression	PI0010960
Synteny	PI0010960
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]

4.8e-45

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M TKRMKM IT+NPKKLANLIDL+NLP+TLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]

4.8e-45

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMKM +T+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]

5.9e-43

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +RMK  IT+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]

4.8e-45

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M TKRMKM IT+NPKKLANLIDL+NLP+TLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]

1.9e-46

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML KRMKM IT+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2E1 SWIB domain-containing protein

2.3e-45

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M TKRMKM IT+NPKKLANLIDL+NLP+TLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A1S3BL41 upstream activation factor subunit spp27

2.3e-45

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMKM +T+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1ELR1 upstream activation factor subunit UAF30

2.8e-43

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +RMK  IT+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1HWJ0 protein TRI1 isoform X1

4.8e-43

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +RMK  IT+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X2

4.8e-43

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +RMK  IT+NPKKLANLIDL+NLP+TLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

SwissProt top hits

e value

%identity

Alignment

O74503 Upstream activation factor subunit spp27

1.4e-07

46.15

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Query:  INLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  INLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI

Q05024 Protein TRI1

3.9e-05

27.78

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Query:  RMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH
        + K    ++P   +  +  + L   L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Subjt:  RMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH

Q08747 Upstream activation factor subunit UAF30

1.2e-06

28.87

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Query:  KRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ++ K T++++P         + L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  KRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

Arabidopsis top hits

e value

%identity

Alignment

AT1G31760.1 SWIB/MDM2 domain superfamily protein

6.7e-13

44.93

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Query:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
        L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein

7.2e-15

34.69

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
        ++ K    T  +  ++   ++ ++ +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK+
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN

AT4G26810.1 SWIB/MDM2 domain superfamily protein

4.5e-41

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +R+K  IT+NPKKL NLIDL+NLP+TLR FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

AT4G26810.2 SWIB/MDM2 domain superfamily protein

4.5e-41

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Query:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        ML +R+K  IT+NPKKL NLIDL+NLP+TLR FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

AT4G34290.1 SWIB/MDM2 domain superfamily protein

2.8e-11

45.45

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Query:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF
        +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK +V   E+  LI  HF
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF

Sequences

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CDS sequence

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ATGCTGACAAAACGGATGAAGATGACCATTACAGAGAACCCAAAGAAGCTTGCAAACTTGATTGATCTCATAAACCTTCCTACAACTCTCAGGGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGATCCCACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAATCCCAAGTGA

mRNA sequence

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Protein sequence

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MLTKRMKMTITENPKKLANLIDLINLPTTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

PI0010960 (gene) of Melon (PI 482460) v1 genome