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PI0010974 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010974
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:10656863..10657165
RNA-Seq ExpressionPI0010974
SyntenyPI0010974
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047234.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-4080Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARN+IERAFS+LKDRWAIL+GKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+ +EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-3980Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIER F +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3980Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRD++A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

KAA0054148.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-4081Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-4081Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

TrEMBL top hitse value%identityAlignment
A0A5A7TWA3 Retrotransposon protein3.8e-4080Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARN+IERAFS+LKDRWAIL+GKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+ +EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

A0A5A7TXW1 Retrotransposon protein8.6e-4080Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRD++A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

A0A5A7U3Z5 Retrotransposon protein6.6e-4080Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIER F +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

A0A5A7UGH9 Retrotransposon protein2.3e-4081Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

A0A5A7VL29 Retrotransposon protein2.3e-4081Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE
        MKHSSARNVIERAF +LK RWAILRGKS+YPVEVQC TILACCLLHNLIN+EMTN D+ ++ DE DSTHAT A DDIHYIETSNEWS WRDD+A+EMF+E
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE

SwissProt top hitse value%identityAlignment
Q17QR8 Putative nuclease HARBI17.3e-0443.14Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAIL---RGKSHYPVEVQCHTILACCLLHNL
        M HS+  +VIE+ F  L  R+  L   +G   Y  E   H ILACC+LHN+
Subjt:  MKHSSARNVIERAFSLLKDRWAIL---RGKSHYPVEVQCHTILACCLLHNL

Q96MB7 Putative nuclease HARBI17.3e-0443.14Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAIL---RGKSHYPVEVQCHTILACCLLHNL
        M HS+  +VIE+ F  L  R+  L   +G   Y  E   H ILACC+LHN+
Subjt:  MKHSSARNVIERAFSLLKDRWAIL---RGKSHYPVEVQCHTILACCLLHNL

Arabidopsis top hitse value%identityAlignment
AT3G19120.1 PIF / Ping-Pong family of plant transposases7.5e-0430.21Show/hide
Query:  RNVIERAFSLLKDRWAILR----GKSHYPVEVQCHTILACCLLHNLIN-KEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEM
        R+V+  A  LLK RW IL+    G +H P      TI+ACC+LHNL         ++  D DE        AG     +E+  ++ ++ + + Q +
Subjt:  RNVIERAFSLLKDRWAILR----GKSHYPVEVQCHTILACCLLHNLIN-KEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEM

AT3G55350.1 PIF / Ping-Pong family of plant transposases1.5e-0442.86Show/hide
Query:  KHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQC-HTILACCLLHNLI
        +HS A    + A S LKDRW I+ G    P   +    I  CCLLHN+I
Subjt:  KHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQC-HTILACCLLHNLI

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)7.2e-0730.43Show/hide
Query:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTN--ADVTNDY-DEGDSTHATIAGDDIHYIETSNE------------
        ++H S RNVIER F + K R+AI +    +  + Q   +L C  LHN + KE  +  AD  ++  +EGD  +    G+ ++  E  NE            
Subjt:  MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTN--ADVTNDY-DEGDSTHATIAGDDIHYIETSNE------------

Query:  WSHWRDDMAQEMFSE
         + WR  MA++M+ +
Subjt:  WSHWRDDMAQEMFSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATTCTTCTGCACGGAATGTCATTGAAAGAGCATTCAGTCTGTTGAAGGATCGCTGGGCAATCCTTCGCGGAAAGTCACATTACCCGGTTGAAGTCCAATGTCA
CACGATACTGGCATGTTGTCTACTACACAATCTTATCAATAAAGAGATGACGAACGCTGATGTGACGAATGACTACGACGAGGGTGATTCGACACACGCAACAATTGCAG
GTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTGGAGGGATGATATGGCCCAAGAGATGTTTAGTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACATTCTTCTGCACGGAATGTCATTGAAAGAGCATTCAGTCTGTTGAAGGATCGCTGGGCAATCCTTCGCGGAAAGTCACATTACCCGGTTGAAGTCCAATGTCA
CACGATACTGGCATGTTGTCTACTACACAATCTTATCAATAAAGAGATGACGAACGCTGATGTGACGAATGACTACGACGAGGGTGATTCGACACACGCAACAATTGCAG
GTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTGGAGGGATGATATGGCCCAAGAGATGTTTAGTGAATAG
Protein sequenceShow/hide protein sequence
MKHSSARNVIERAFSLLKDRWAILRGKSHYPVEVQCHTILACCLLHNLINKEMTNADVTNDYDEGDSTHATIAGDDIHYIETSNEWSHWRDDMAQEMFSE