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PI0010993 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0010993
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:17461974..17464459
RNA-Seq ExpressionPI0010993
SyntenyPI0010993
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.3e-4058.33Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVC LVGHPND    + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS    L  KNE KEEK+ET+ SPS+ K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-4361.71Show/hide
Query:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ
        +KV KCGVCGLVGHPND  L + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ EMKQQ
Subjt:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ

Query:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-4057.78Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVCGLVGHPND       +       + IV    P G T          LRWG+DNQ+  QA S+S+NQG NLED++KALA NT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL+TP++ E+KVTS    L  KNE KEE +ET+ SPS++K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-4058.33Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVCGLVGH N+    + +        + IV    P   T         NLRWG+DNQ+  QA S+S+NQG NLED++KALATNT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-4361.71Show/hide
Query:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ
        +KV KCGVCGLVGHPND  L + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ EMKQQ
Subjt:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ

Query:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

TrEMBL top hitse value%identityAlignment
A0A5A7V594 Retrotransposon gag protein8.0e-4461.71Show/hide
Query:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ
        +KV KCGVCGLVGHPND  L + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ EMKQQ
Subjt:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ

Query:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

A0A5A7VE49 Retrotransposon gag protein6.3e-4157.78Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVCGLVGHPND       +       + IV    P G T          LRWG+DNQ+  QA S+S+NQG NLED++KALA NT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL+TP++ E+KVTS    L  KNE KEE +ET+ SPS++K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

A0A5A7VQ60 Retrotransposon gag protein1.4e-4058.33Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVCGLVGH N+    + +        + IV    P   T         NLRWG+DNQ+  QA S+S+NQG NLED++KALATNT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

A0A5D3DS57 Retrotransposon gag protein8.0e-4461.71Show/hide
Query:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ
        +KV KCGVCGLVGHPND  L + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ EMKQQ
Subjt:  VKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQ

Query:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+KVTS P  L  KNE KEEK+ET+ SPS+ K
Subjt:  ISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

E5GBZ4 Retrotransposon gag protein6.3e-4158.33Show/hide
Query:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN
        + G  +KV KCGVC LVGHPND    + +        + IV    P G T         NLRWG+DNQ+  QA  +S+NQG NLED++KALATNT+SFQ 
Subjt:  IDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGET-------TLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK
        EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS    L  KNE KEEK+ET+ SPS+ K
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKLETSTSPSSLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGAGGATCGACGGTGGATTTGTGAAAGTCGCTAAGTGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAGTGTCCTGACCTTGTGGAAGAGGCA
AATGTCATTTGGAAGTACGATCCTCATAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAAACCTTAGATGGGGAAGCGATAACCAAAGACCCGCGCAAGCAACTT
CCTCTTCAAATAATCAAGGTAATAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCAGATCATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGA
AGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATTAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCACGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGAGGATCGACGGTGGATTTGTGAAAGTCGCTAAGTGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAGTGTCCTGACCTTGTGGAAGAGGCA
AATGTCATTTGGAAGTACGATCCTCATAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAAACCTTAGATGGGGAAGCGATAACCAAAGACCCGCGCAAGCAACTT
CCTCTTCAAATAATCAAGGTAATAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCAGATCATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGA
AGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATTAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCACGGATTGA
Protein sequenceShow/hide protein sequence
MAPLPRIDGGFVKVAKCGVCGLVGHPNDSVLTLWKRQMSFGSTILIVTLTMPVGETTLNLRWGSDNQRPAQATSSSNNQGNNLEDLVKALATNTISFQNEMKQQISQLTN
AISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTPDLLEDKNEKKEEKLETSTSPSSLKGTTD