; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011019 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011019
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationtig00003624:1061759..1063659
RNA-Seq ExpressionPI0011019
SyntenyPI0011019
Gene Ontology termsNA
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463465.1 PREDICTED: uncharacterized protein LOC103501632 [Cucumis melo]9.8e-3243.32Show/hide
Query:  RATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFR------------FGCKPYGLYTFVKEES-----
        R   LRMNP KCAFG++ GKFLGF+V  RG+EVD S++ AI +MP P ++ +L+ F G+L+ IR  +               KP  LY   +E S     
Subjt:  RATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFR------------FGCKPYGLYTFVKEES-----

Query:  AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGE
        A   D D LRHY+ A  IHL+ KS P+ Y+++RP +SGRL  W   L QYDIV +   A+KGQA+AD L   P  ++  + E +P E
Subjt:  AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGE

XP_020410971.1 uncharacterized protein LOC109946728 [Prunus persica]7.5e-3236.15Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC----------------------------
        +CR   L+MNP KCAFG+S+GKFLGF VH RG++VD  + +A+  +  P + K+LKSFMG+LS IRRF  G                             
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC----------------------------

Query:  ------------------KPYGLY---------------TFVKEESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL
                          +P  LY               +   EES IY                             LRHY LAH + L+ KS P+ YL
Subjt:  ------------------KPYGLY---------------TFVKEESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL

Query:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE
        LTRP LSGRL  WL  LS++DIVC TP +I+GQAV D+L  FP   +  +SE++ GE+ E
Subjt:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE

XP_020426617.1 uncharacterized protein LOC109950879 [Prunus persica]3.0e-3338.08Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC--------------KPY-----------
        +CR   L+MNP KCAFG+S+GKFLGF VH RG++VD  + +AI+ +  P + K+LKSFMG+LS IRRF  G               KPY           
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC--------------KPY-----------

Query:  ---------------------GLYTFVK---------------EESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL
                              LY                   EES IY                             LRHY LAH + LM KS P+ YL
Subjt:  ---------------------GLYTFVK---------------EESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL

Query:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE
        LTRP LSGRL  WL  LS++DI C TP AIKGQAV D+L  FP   +   S+++PGE+ E
Subjt:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE

XP_021827276.1 uncharacterized protein LOC110767920 [Prunus avium]4.7e-3437.79Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKPY-GLYT--------------------
        +CR   L+MNP KCAFG+S+GKFLGF VH RG+ VD  + K IS +  P + K+LKSFMG+LS IRRF  G     G++T                    
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKPY-GLYT--------------------

Query:  -----FVK-----------------------------------EESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL
              VK                                   EES IY                             LRHY LAH + LM KS P+ YL
Subjt:  -----FVK-----------------------------------EESAIY------------------------MDPDMLRHYLLAHPIHLMTKSHPIPYL

Query:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGETS
        LTRP LSGRL  WL  LS++DI C+TP+AIKGQAV D+L  FP   +  +S+++PGE+ E +
Subjt:  LTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGETS

XP_023908129.1 uncharacterized protein LOC112019817 [Quercus suber]1.5e-3234.84Show/hide
Query:  EVSVLPRTNQNFLRAC-----QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRF-----------
        ++ V  +T +++ R       +CR   LRMNP KCAFG++AGKFLGFL+H +G++VD  ++KAI  M  P SVK+ KSF+GKLS I RF           
Subjt:  EVSVLPRTNQNFLRAC-----QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRF-----------

Query:  ----RFGCK-------------------------------PYGLYTFVKEES---------------------------------------AIYMDPDML
            + G K                               P  LY    +++                                       ++      L
Subjt:  ----RFGCK-------------------------------PYGLYTFVKEES---------------------------------------AIYMDPDML

Query:  RHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGETSEIKE
        RHYLLA+ +HLMTKS+PI  LL RP LSGRL  WL  LS+YDIV V P A+KGQA+A+LL +F   +   I++++PGEV E + ++E
Subjt:  RHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGETSEIKE

TrEMBL top hitse value%identityAlignment
A0A2N9ERP7 Ribonuclease H2.1e-4047.09Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC---------KPYGLY---------TFVK
        +CR   L+MNP KCAFG+SAGKFLGFLVH+RG++VD ++  AI+ M  PTS K+LKSF+G+LS IRRF  G          KP  LY           V 
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGC---------KPYGLY---------TFVK

Query:  EES------------------------------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVAD
        +E+                              A+      LRHY LAH I LMTKSHPI  LL RP LSGRL  WL  LSQY+I   TP AIK QA+AD
Subjt:  EES------------------------------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVAD

Query:  LLEKFPRGNDLPISEQIPGEVGE
        LL +FP  +   IS+++PGEVGE
Subjt:  LLEKFPRGNDLPISEQIPGEVGE

A0A2N9FZM0 Ribonuclease H7.3e-4147.37Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFG------CKPYGLYTFVKEES---------
        +CR   L+MNP KCAFG+SAGKFLGFLVH RG++VD +R  AI+ M  PT+ K+LKSF+GKLS IRRF  G       K  G     ++ S         
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFG------CKPYGLYTFVKEES---------

Query:  -------------------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPIS
                           A+      LRHY LAH + LMT+SHPI  LL RP LSGRL  WL  LSQY+I+  TP AIK QA+ADLL +FP  ++  IS
Subjt:  -------------------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPIS

Query:  EQIPGEVGE
        +++PGE+ E
Subjt:  EQIPGEVGE

A0A2N9GEB7 Ribonuclease H4.7e-4048.22Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKP-----------YGLYTFVKEESAIYM
        +CR   L++NP KCAFG+ AGKFLGFLV++RG++VD ++  AI+ M  PTS K+LKSF+G+LS IRRF  G  P           Y +   +++    Y 
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKP-----------YGLYTFVKEESAIYM

Query:  DPD-----------MLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE
          +            LRHY LAH I LMTKSHPI  LL R  LSG+L  WL  LSQY+I+  TP AIK QA+ADLL +FP  +   IS ++PGE+GE
Subjt:  DPD-----------MLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGE

A0A2N9HYA5 Reverse transcriptase1.1e-4151.79Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKPYGLYTFVKEES---------------
        +CR   L+MNP KCAFG+SAGKFLGFLVH+RG++VD ++  AI+ M  PTS K+LKSF+G+LS IRRF  G     L    K  S               
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKPYGLYTFVKEES---------------

Query:  ------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVG
              A+      LRHY LAH I LMTKSHPI  LL RP LSGRL  WL  LSQY+I   TP AIK QA+ADLL +FP  +   IS+++PGEVG
Subjt:  ------AIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVG

A0A2N9I813 Ribonuclease H7.3e-4148.34Show/hide
Query:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFG-------------------CKPY------
        +CR   L+MNP KCAFG+SAGKFLGFLVH+RG++VD ++  AI+ M  PTS+K+LKSF+G+LS IRRF  G                   C P       
Subjt:  QCRATNLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFG-------------------CKPY------

Query:  -----------GLYTFVKEESAIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLP
                   GL T   E+         LRHY LAH I LMTKSHPI  LL RP LSGRL  WL  LSQY+I+  TP  IK QA+ADLL +FP  +   
Subjt:  -----------GLYTFVKEESAIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDIVCVTPAAIKGQAVADLLEKFPRGNDLP

Query:  ISEQIPGEVGE
        IS ++PG VGE
Subjt:  ISEQIPGEVGE

SwissProt top hitse value%identityAlignment
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.0e-0746.03Show/hide
Query:  NLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRF
        NL++N  K  F  +  +FLG++V + G++ D  +++AISEMP PTSVK+LK F+G  S  R+F
Subjt:  NLRMNPAKCAFGLSAGKFLGFLVHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAATAAAGTACTTGCAAGCTTACTCTTCTTTGAGAAGGGTCCTAACCGTTTGAGGGTGAGGGCTCTCGAGCCTTGGCATCACATCAGTCGTCGTTGGATCACAGC
TATAATAGAATTCGGATTTCTAGCTCTCGAAACTAAGCGACTAAACCTATCTTCTAAGGCAGGATATTTGCCGATGGATGGAGTTGTAGTGGAAGTTTCAGTTCTACCTC
GTACGAACCAGAATTTCCTCAGGGCTTGCCAATGCCGGGCTACCAACCTTCGCATGAATCCGGCTAAGTGTGCATTCGGTCTTTCTGCTGGGAAGTTTCTAGGTTTTCTA
GTTCACAGCAGAGGGGTCGAAGTTGATGCTTCTAGACTCAAAGCCATATCCGAGATGCCAAGGCCGACTTCAGTCAAGCAACTCAAAAGCTTCATGGGCAAATTGTCTGA
GATCCGAAGGTTCCGGTTTGGCTGCAAACCTTATGGCCTTTATACCTTTGTTAAGGAAGAATCCGCCATTTACATGGACCCCGACATGTTGCGTCATTATCTTCTTGCAC
ATCCCATTCACCTCATGACCAAGTCACACCCTATCCCTTACCTGCTTACTCGCCCAAGACTCTCAGGAAGACTGGATAATTGGCTGCGAACATTATCTCAGTATGATATA
GTGTGCGTTACGCCAGCAGCAATCAAAGGTCAAGCAGTCGCGGATTTATTGGAAAAATTCCCAAGGGGAAATGACCTACCGATCAGTGAACAGATACCTGGAGAAGTTGG
GGAAACAAGTGAGATCAAGGAGGCAACCGTGAAAGACATAGAAAAAGAAAGAGAAAGAGCAAGAAATGAATTTGAGAAAAGTGAAAGAATTATGTGTATAAGTAGCATAG
AGGAATATGTGTCCTTATCATCTGAATTTGATGGCCATGCATCTTGGGAAGATGACACGCAAAAGGCCCATGCAATAGAGGACAAAGAAGGGACCACTAGTGGTGGAGCC
CATGCGACCACTATAGATTGTCTCGTCCCAGCAGCGGCTGAGTGTGCCCAAGTTGCCAGCAGTGACCGCCACCCTAGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAATAAAGTACTTGCAAGCTTACTCTTCTTTGAGAAGGGTCCTAACCGTTTGAGGGTGAGGGCTCTCGAGCCTTGGCATCACATCAGTCGTCGTTGGATCACAGC
TATAATAGAATTCGGATTTCTAGCTCTCGAAACTAAGCGACTAAACCTATCTTCTAAGGCAGGATATTTGCCGATGGATGGAGTTGTAGTGGAAGTTTCAGTTCTACCTC
GTACGAACCAGAATTTCCTCAGGGCTTGCCAATGCCGGGCTACCAACCTTCGCATGAATCCGGCTAAGTGTGCATTCGGTCTTTCTGCTGGGAAGTTTCTAGGTTTTCTA
GTTCACAGCAGAGGGGTCGAAGTTGATGCTTCTAGACTCAAAGCCATATCCGAGATGCCAAGGCCGACTTCAGTCAAGCAACTCAAAAGCTTCATGGGCAAATTGTCTGA
GATCCGAAGGTTCCGGTTTGGCTGCAAACCTTATGGCCTTTATACCTTTGTTAAGGAAGAATCCGCCATTTACATGGACCCCGACATGTTGCGTCATTATCTTCTTGCAC
ATCCCATTCACCTCATGACCAAGTCACACCCTATCCCTTACCTGCTTACTCGCCCAAGACTCTCAGGAAGACTGGATAATTGGCTGCGAACATTATCTCAGTATGATATA
GTGTGCGTTACGCCAGCAGCAATCAAAGGTCAAGCAGTCGCGGATTTATTGGAAAAATTCCCAAGGGGAAATGACCTACCGATCAGTGAACAGATACCTGGAGAAGTTGG
GGAAACAAGTGAGATCAAGGAGGCAACCGTGAAAGACATAGAAAAAGAAAGAGAAAGAGCAAGAAATGAATTTGAGAAAAGTGAAAGAATTATGTGTATAAGTAGCATAG
AGGAATATGTGTCCTTATCATCTGAATTTGATGGCCATGCATCTTGGGAAGATGACACGCAAAAGGCCCATGCAATAGAGGACAAAGAAGGGACCACTAGTGGTGGAGCC
CATGCGACCACTATAGATTGTCTCGTCCCAGCAGCGGCTGAGTGTGCCCAAGTTGCCAGCAGTGACCGCCACCCTAGACTTTGA
Protein sequenceShow/hide protein sequence
MINKVLASLLFFEKGPNRLRVRALEPWHHISRRWITAIIEFGFLALETKRLNLSSKAGYLPMDGVVVEVSVLPRTNQNFLRACQCRATNLRMNPAKCAFGLSAGKFLGFL
VHSRGVEVDASRLKAISEMPRPTSVKQLKSFMGKLSEIRRFRFGCKPYGLYTFVKEESAIYMDPDMLRHYLLAHPIHLMTKSHPIPYLLTRPRLSGRLDNWLRTLSQYDI
VCVTPAAIKGQAVADLLEKFPRGNDLPISEQIPGEVGETSEIKEATVKDIEKERERARNEFEKSERIMCISSIEEYVSLSSEFDGHASWEDDTQKAHAIEDKEGTTSGGA
HATTIDCLVPAAAECAQVASSDRHPRL