CuGenDBv2

Gene ID	PI0011035
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr03:12864610..12865491
RNA-Seq Expression	PI0011035
Synteny	PI0011035
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]

1.5e-16

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

1.5e-16

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Query:  MEVGNGRLCR---------GSDFGACRERVICDALS-RLARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGN   CR          +      ERV+ DA S R AR S+FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLCR---------GSDFGACRERVICDALS-RLARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DRL R
Subjt:  RLGTQDRLGR

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]

1.5e-16

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]

1.5e-16

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]

2.1e-13

58.06

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Query:  FITANGSQGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKDRLGTQDRLGR
        ++  +GS   FSI SAWET+RP S  + W GLLW  G+IP+  FCAWL I+DRLGT+DRL R
Subjt:  FITANGSQGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKDRLGTQDRLGR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSI8 uncharacterized protein LOC103493225

7.4e-17

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

A0A5A7UP65 Reverse transcriptase

7.4e-17

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

A0A5A7UV01 F17F8.5

7.4e-17

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Query:  MEVGNGRLCR---------GSDFGACRERVICDALS-RLARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGN   CR          +      ERV+ DA S R AR S+FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLCR---------GSDFGACRERVICDALS-RLARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DRL R
Subjt:  RLGTQDRLGR

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein

1.1e-12

40.48

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Query:  LCRGSDFGACRERVICDALSRL-ARPSEFITANGS------------------------------------QGQFSIASAWETLRPRSFPIPWFGLLWAE
        + RG+      ERV+ DA SR  AR S+FI +NG                                     QG FSIASAW+ +RPR   + W GLLW  
Subjt:  LCRGSDFGACRERVICDALSRL-ARPSEFITANGS------------------------------------QGQFSIASAWETLRPRSFPIPWFGLLWAE

Query:  GSIPRLFFCAWLTIKDRLGTQDRLGR
         +IP+  FCAWL IKDRLGT+DRL R
Subjt:  GSIPRLFFCAWLTIKDRLGTQDRLGR

A0A5D3D7P6 Reverse transcriptase

7.4e-17

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Query:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD
        M+VGNG  C         RG+      ERV+ DA SR  A  S FI  +G     +G FSIASAWE +RPR   + W GLLW  G+IP+  FCAWL IKD
Subjt:  MEVGNGRLC---------RGSDFGACRERVICDALSRL-ARPSEFITANGS----QGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKD

Query:  RLGTQDRLGR
        RLGT+DR  R
Subjt:  RLGTQDRLGR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.4e-05

36.96

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Query:  SAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKDRLGTQDRL
        + W  L P    + WF  +W +G IP+  F AW+ ++ RL T+DR+
Subjt:  SAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKDRLGTQDRL

Sequences

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CDS sequence

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ATGGAGGTTGGTAATGGTCGGTTGTGTCGGGGGTCCGATTTTGGAGCATGTAGGGAGCGTGTGATTTGTGACGCTTTGAGTAGGCTCGCTAGACCTTCGGAGTTCATCAC
GGCTAATGGTAGTCAGGGTCAATTTTCTATTGCAAGTGCTTGGGAGACTCTTCGTCCTAGAAGTTTTCCGATTCCTTGGTTTGGTTTGTTGTGGGCTGAGGGGAGCATTC
CTAGGCTTTTCTTTTGTGCTTGGCTTACTATTAAGGACCGTTTGGGGACGCAAGATAGGTTGGGTAGGAACAAAATTGTCATCTCCATGATTGACGATGTCAAAAATATT
ACCCTTACTTACCGTAGTAGGCGGAAGTACGAGTGTCGAACCTAA

mRNA sequence

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Protein sequence

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MEVGNGRLCRGSDFGACRERVICDALSRLARPSEFITANGSQGQFSIASAWETLRPRSFPIPWFGLLWAEGSIPRLFFCAWLTIKDRLGTQDRLGRNKIVISMIDDVKNI
TLTYRSRRKYECRT

PI0011035 (gene) of Melon (PI 482460) v1 genome