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PI0011038 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011038
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:15263549..15263716
RNA-Seq ExpressionPI0011038
SyntenyPI0011038
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.1e-1172.73Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        MSPN+IMGT+PG  SEG+T S+G KRKRGGQA E  EIIR+A EYAND+LK IAE
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

KAA0055556.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-0968.63Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK
        MSP+DI GTRPG  S+GR  S GSKRKR G   ET+EIIR+ MEYAND+LK
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-1274.55Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        M P+DIMGTRP R SE RT SSGSKRK+GGQ  E++EIIRSAMEY N +LKAIAE
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-1170.91Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        M  +DIMGTRP R +EGRT SSGSKRK+GGQA ET+EIIR+ ME++ND LKAI E
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

TYK01364.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-1070.59Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK
        MSP+DI GTRPG  S+GR  S GSKRKRGG   ET+EIIR+ MEYAND+LK
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL665.4e-1272.73Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        MSPN+IMGT+PG  SEG+T S+G KRKRGGQA E  EIIR+A EYAND+LK IAE
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

A0A5A7UMR6 Retrotransposon protein1.5e-0968.63Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK
        MSP+DI GTRPG  S+GR  S GSKRKR G   ET+EIIR+ MEYAND+LK
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK

A0A5A7V3C0 Retrotransposon protein3.2e-1274.55Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        M P+DIMGTRP R SE RT SSGSKRK+GGQ  E++EIIRSAMEY N +LKAIAE
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

A0A5A7V469 Retrotransposon protein2.7e-1170.91Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE
        M  +DIMGTRP R +EGRT SSGSKRK+GGQA ET+EIIR+ ME++ND LKAI E
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE

A0A5D3BQB5 Retrotransposon protein1.7e-1070.59Show/hide
Query:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK
        MSP+DI GTRPG  S+GR  S GSKRKRGG   ET+EIIR+ MEYAND+LK
Subjt:  MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGGTTGTCTGAGGGTAGGACGGATTCGAGCGGTTCCAAGAGGAAACGGGGAGGGCAAGCGTTCGAGACGATAGA
AATTATTCGCAGTGCCATGGAATATGCAAATGACGAGCTGAAGGCCATTGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGGTTGTCTGAGGGTAGGACGGATTCGAGCGGTTCCAAGAGGAAACGGGGAGGGCAAGCGTTCGAGACGATAGA
AATTATTCGCAGTGCCATGGAATATGCAAATGACGAGCTGAAGGCCATTGCAGAATGA
Protein sequenceShow/hide protein sequence
MSPNDIMGTRPGRLSEGRTDSSGSKRKRGGQAFETIEIIRSAMEYANDELKAIAE