; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011213 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011213
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr02:17882200..17883726
RNA-Seq ExpressionPI0011213
SyntenyPI0011213
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056211.1 uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa]2.3e-7138.78Show/hide
Query:  VGSAVKNVRTNKHGVRLRGS--STISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLSSTAVPAPSNSDHHQSSAST
        VG +   V    H  R   +  S + S    + PL+   +  +   T+  +PS P      +  SSS + + +    +   S A+ +  +S  H S +  
Subjt:  VGSAVKNVRTNKHGVRLRGS--STISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLSSTAVPAPSNSDHHQSSAST

Query:  PTLDENFTDPPPDSVSDP-----APQS--------TPTKVKSKT----KRVSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDD
         T   + T+ PP+ +  P     AP S        +P   K KT    + V+T++ R+++P +V SVPIDGISFHHE  V  WK+V+Q+RI  E ++SD 
Subjt:  PTLDENFTDPPPDSVSDP-----APQS--------TPTKVKSKT----KRVSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDD

Query:  HHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKK
        H S +++M LI +A L  T+S+VGP+YP+LIRE  VN+P  F+NPSS DY T+HI G  F  S   ++ FLG T+  D SPS  T++ LA+ ++GG +  
Subjt:  HHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKK

Query:  WPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-EAHGPSPTKIQLSYRLFQG
        WP NG + AA L+VKYAILHKIGI NW PS H+S++S +L   +Y I     V+  + + NQL RH+ S+ VK   CL H     P P  I LSYRLFQG
Subjt:  WPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-EAHGPSPTKIQLSYRLFQG

Query:  AHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSISILIHDLTDRRNEIDSVITSVQLLISSNPDAPAPQPPS
        +HVPDIDH  HP+   R  +  +     +G +    LA ++++ LT+ESR+++  I  L++RR E+D++I  ++   SS P     QPPS
Subjt:  AHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSISILIHDLTDRRNEIDSVITSVQLLISSNPDAPAPQPPS

KAA0066044.1 uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa]3.3e-7040.67Show/hide
Query:  TSSSSSQDNI--PLSRLLNHLSSTAVPAPSNS---------------DHHQSSASTPTLDENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------V
        T  SSS + +  P+  +++   S A P  ++S               D+          D N   P  D+V   APQ T   PT+ K   K+       +
Subjt:  TSSSSSQDNI--PLSRLLNHLSSTAVPAPSNS---------------DHHQSSASTPTLDENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------V

Query:  STQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYH
        +T+ GR+++PL++ SVPI+GISFH E +V +WK+V+QRRIA E ++SD HHS +++M LI +A L  T+S+VGP+YP+LIRE  VN+P  F++PSSP+Y 
Subjt:  STQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYH

Query:  TIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQ
        T+HI+G  F+ SP  +N FLG  +  + SPS P +D LA  ++GGI+  WP NG +    LSVKY ILHKIGI NW PS H+S+VS +L   +Y I    
Subjt:  TIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQ

Query:  PVDFGSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSI
            G      L  H+++      +    +A G  P  + LSYRLFQ +HVPDIDH  HPS   R  +  +     DG F    LA+++L+ LT++SRS+
Subjt:  PVDFGSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSI

Query:  SILIHDLTDRRNEIDSVI
        S  I  +++RR EIDS+I
Subjt:  SILIHDLTDRRNEIDSVI

TYJ96199.1 uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa]8.6e-7146.75Show/hide
Query:  DENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------VSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTL
        D N   P  D++   A Q T   PT+ KS  K+       ++T++GR+++PL++ SVPI GISFHHE +V +WK+V+QRRIA E ++S+ HHS ++++ L
Subjt:  DENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------VSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTL

Query:  ISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAA
        I +A L  T+SNVG  YPKLIR+  VN+   F++PSSPDY T+HIRG  F+ SP  +N FLG  +  + SPS P++D LAS ++GG +  W  +G + A 
Subjt:  ISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAA

Query:  RLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-----------------EAHGPSPTKIQLS
         LSV YAILHKIGI NW PS H+S+VS +L   +Y I     VD G+F+ NQL RH+ S+ VKL I LP                  +A  P P  + LS
Subjt:  RLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-----------------EAHGPSPTKIQLS

Query:  YRLFQGAHVPDIDHSFHPSSSTR
        YRLFQ +HVPDIDH  HPS   R
Subjt:  YRLFQGAHVPDIDHSFHPSSSTR

TYK16303.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.3e-7134.36Show/hide
Query:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS
        S  P P KS+    G   K + T     ++R        G     S+PV S+    S + ++       VP   +   + +   S+Q + P       +S
Subjt:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS

Query:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP
        S     P  SDH             Q+S  +   D++ TD     P +     P++T T ++               ++   +ST++GR+++P +V  VP
Subjt:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP

Query:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN
        IDG+SFH E   HKW YV++RRIA E+++ D ++S+ A++ LI   +L+ TVS VGP+YP+L+RE+ VN+P+ F++PS+ +Y  +HIRG+ F+ SP  LN
Subjt:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN

Query:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID
        T+LG++LP+D + S PT + LA E+TGG +  WP +G L  A L++KY+ILH+I I NW+PS H+ T+S SL H +Y++GTG  V+   F+ N L RH+D
Subjt:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID

Query:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES
        ++A+ +PIC P                  +  G  P  I L   LFQG+++PDI    D++   +S     +  +  P   L    SL N +L  L +ES
Subjt:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES

Query:  RSISILIHDLTDRRNEIDSVI
         S++  I DLTDRR  +D+V+
Subjt:  RSISILIHDLTDRRNEIDSVI

XP_008464590.1 PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo]8.6e-7146.75Show/hide
Query:  DENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------VSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTL
        D N   P  D++   A Q T   PT+ KS  K+       ++T++GR+++PL++ SVPI GISFHHE +V +WK+V+QRRIA E ++S+ HHS ++++ L
Subjt:  DENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------VSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTL

Query:  ISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAA
        I +A L  T+SNVG  YPKLIR+  VN+   F++PSSPDY T+HIRG  F+ SP  +N FLG  +  + SPS P++D LAS ++GG +  W  +G + A 
Subjt:  ISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAA

Query:  RLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-----------------EAHGPSPTKIQLS
         LSV YAILHKIGI NW PS H+S+VS +L   +Y I     VD G+F+ NQL RH+ S+ VKL I LP                  +A  P P  + LS
Subjt:  RLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-----------------EAHGPSPTKIQLS

Query:  YRLFQGAHVPDIDHSFHPSSSTR
        YRLFQ +HVPDIDH  HPS   R
Subjt:  YRLFQGAHVPDIDHSFHPSSSTR

TrEMBL top hitse value%identityAlignment
A0A5A7UQ31 Uncharacterized protein6.0e-7037.57Show/hide
Query:  MVSTRRGYYSSQVPVPKKSVNPHVGSAVKNVRTNKHGVRLRGSSTISSTPVSSAPLVSSSSSTTNTSTS----------SPVPSSPVNVPTVTSS-----
        MV+TR+G Y S   VP+            + R   HG+R+ G    S+ P     L S  +    +S S            V       P  + +     
Subjt:  MVSTRRGYYSSQVPVPKKSVNPHVGSAVKNVRTNKHGVRLRGSSTISSTPVSSAPLVSSSSSTTNTSTS----------SPVPSSPVNVPTVTSS-----

Query:  -SSSQDNIPLSRLLNHLSS-TAVPAPSN----SDHHQSSAST-----PT-----LDENFTDPPPDSVSDPAPQSTP---TKVKSKTKR-------VSTQS
         S   D++PL+RL+  +++  AVP   N    SD  Q S+S+     PT     +D N      DSV   A Q TP   T+ K   K+       ++T+ 
Subjt:  -SSSQDNIPLSRLLNHLSS-TAVPAPSN----SDHHQSSAST-----PT-----LDENFTDPPPDSVSDPAPQSTP---TKVKSKTKR-------VSTQS

Query:  GRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHI
        GR+++PL++ SVPIDGI FH E +V  WK+++QRRIA E ++SD HHS ++++ LI++A L  T+S+VGP+YP+LIRE  VN+PT F++ SSPDY T+HI
Subjt:  GRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHI

Query:  RGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDF
        RG  FS +   +N FLG  +  + +PS P++D LASE++GG +  WP NG +  A LSVKYAILHKIGI NW    H+S+VS +L   +Y I     VD 
Subjt:  RGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDF

Query:  GSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTR----PNYDNLRSPVDGLFFPPSLANQVLHVLTSESRSIS
        G+F+ NQL +H+ S+ VKL I LP                    +HVPDIDH  HP+   R     ++D +    DG F    LA+++L+ L +ESRS++
Subjt:  GSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTR----PNYDNLRSPVDGLFFPPSLANQVLHVLTSESRSIS

Query:  ILIHDLTDRRNEIDSVITSVQLLISSN
          I  +++RR +IDS+I  ++    S+
Subjt:  ILIHDLTDRRNEIDSVITSVQLLISSN

A0A5A7URQ6 Uncharacterized protein1.1e-7138.78Show/hide
Query:  VGSAVKNVRTNKHGVRLRGS--STISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLSSTAVPAPSNSDHHQSSAST
        VG +   V    H  R   +  S + S    + PL+   +  +   T+  +PS P      +  SSS + + +    +   S A+ +  +S  H S +  
Subjt:  VGSAVKNVRTNKHGVRLRGS--STISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLSSTAVPAPSNSDHHQSSAST

Query:  PTLDENFTDPPPDSVSDP-----APQS--------TPTKVKSKT----KRVSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDD
         T   + T+ PP+ +  P     AP S        +P   K KT    + V+T++ R+++P +V SVPIDGISFHHE  V  WK+V+Q+RI  E ++SD 
Subjt:  PTLDENFTDPPPDSVSDP-----APQS--------TPTKVKSKT----KRVSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDD

Query:  HHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKK
        H S +++M LI +A L  T+S+VGP+YP+LIRE  VN+P  F+NPSS DY T+HI G  F  S   ++ FLG T+  D SPS  T++ LA+ ++GG +  
Subjt:  HHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKK

Query:  WPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-EAHGPSPTKIQLSYRLFQG
        WP NG + AA L+VKYAILHKIGI NW PS H+S++S +L   +Y I     V+  + + NQL RH+ S+ VK   CL H     P P  I LSYRLFQG
Subjt:  WPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPH-EAHGPSPTKIQLSYRLFQG

Query:  AHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSISILIHDLTDRRNEIDSVITSVQLLISSNPDAPAPQPPS
        +HVPDIDH  HP+   R  +  +     +G +    LA ++++ LT+ESR+++  I  L++RR E+D++I  ++   SS P     QPPS
Subjt:  AHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSISILIHDLTDRRNEIDSVITSVQLLISSNPDAPAPQPPS

A0A5A7V603 Gag-pol polyprotein2.1e-7034.17Show/hide
Query:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS
        S  P P KS+    G   K + T     ++R        G     S+PV S+    S + ++       VP   +   + +   S+Q + P       +S
Subjt:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS

Query:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP
        S     P  SDH             Q+S  +   D++ TD     P +     P++T T ++               ++   +ST++GR+++P +V  VP
Subjt:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP

Query:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN
        IDG+SFH E   HKW YV++RRIA E+++ D ++S+ A++ LI   +L+ TVS VGP+YP+L+RE+ VN+P+ F++PS+ +Y  +HIRG+ F+ SP  LN
Subjt:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN

Query:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID
        T+LG++LP+D + S PT + LA E+TGG +  WP +G L  A L++KY+ILH+I I NW+PS H+ T+  SL H +Y++GTG  V+   F+ N L RH+D
Subjt:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID

Query:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES
        ++A+ +PIC P                  +  G  P  I L   LFQG+++PDI    D++   +S     +  +  P   L    SL N +L  L +ES
Subjt:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES

Query:  RSISILIHDLTDRRNEIDSVI
         S++  I DLTDRR  +D V+
Subjt:  RSISILIHDLTDRRNEIDSVI

A0A5A7VFF7 Uncharacterized protein1.6e-7040.67Show/hide
Query:  TSSSSSQDNI--PLSRLLNHLSSTAVPAPSNS---------------DHHQSSASTPTLDENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------V
        T  SSS + +  P+  +++   S A P  ++S               D+          D N   P  D+V   APQ T   PT+ K   K+       +
Subjt:  TSSSSSQDNI--PLSRLLNHLSSTAVPAPSNS---------------DHHQSSASTPTLDENFTDPPPDSVSDPAPQST---PTKVKSKTKR-------V

Query:  STQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYH
        +T+ GR+++PL++ SVPI+GISFH E +V +WK+V+QRRIA E ++SD HHS +++M LI +A L  T+S+VGP+YP+LIRE  VN+P  F++PSSP+Y 
Subjt:  STQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYH

Query:  TIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQ
        T+HI+G  F+ SP  +N FLG  +  + SPS P +D LA  ++GGI+  WP NG +    LSVKY ILHKIGI NW PS H+S+VS +L   +Y I    
Subjt:  TIHIRGLPFSFSPHSLNTFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQ

Query:  PVDFGSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSI
            G      L  H+++      +    +A G  P  + LSYRLFQ +HVPDIDH  HPS   R  +  +     DG F    LA+++L+ LT++SRS+
Subjt:  PVDFGSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTRP-NYDNLRSPVDGLFFPPSLANQVLHVLTSESRSI

Query:  SILIHDLTDRRNEIDSVI
        S  I  +++RR EIDS+I
Subjt:  SILIHDLTDRRNEIDSVI

A0A5D3CWQ1 Gag-pol polyprotein1.1e-7134.36Show/hide
Query:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS
        S  P P KS+    G   K + T     ++R        G     S+PV S+    S + ++       VP   +   + +   S+Q + P       +S
Subjt:  SQVPVPKKSVNPHVGSAVKNVRTNKHGVRLR--------GSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLS

Query:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP
        S     P  SDH             Q+S  +   D++ TD     P +     P++T T ++               ++   +ST++GR+++P +V  VP
Subjt:  STAVPAPSNSDHH------------QSSASTPTLDENFTDPP---PDSVSDPAPQSTPTKVK---------------SKTKRVSTQSGRRQVPLHVNSVP

Query:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN
        IDG+SFH E   HKW YV++RRIA E+++ D ++S+ A++ LI   +L+ TVS VGP+YP+L+RE+ VN+P+ F++PS+ +Y  +HIRG+ F+ SP  LN
Subjt:  IDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKLLTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLN

Query:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID
        T+LG++LP+D + S PT + LA E+TGG +  WP +G L  A L++KY+ILH+I I NW+PS H+ T+S SL H +Y++GTG  V+   F+ N L RH+D
Subjt:  TFLGITLPSD-SPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNWLPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHID

Query:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES
        ++A+ +PIC P                  +  G  P  I L   LFQG+++PDI    D++   +S     +  +  P   L    SL N +L  L +ES
Subjt:  SYAVKLPICLPH-----------------EAHGPSPTKIQLSYRLFQGAHVPDI----DHSFHPSSSTRPNYDNLRSPVDGLFFPPSLANQVLHVLTSES

Query:  RSISILIHDLTDRRNEIDSVI
         S++  I DLTDRR  +D+V+
Subjt:  RSISILIHDLTDRRNEIDSVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGCACAAGACGAGGTTATTACTCTTCTCAAGTTCCTGTTCCTAAGAAATCTGTCAACCCACATGTTGGTTCCGCTGTCAAAAACGTGCGTACTAACAAACATGG
GGTCCGTTTGCGGGGTTCGTCCACAATCTCTTCAACTCCTGTGTCTTCCGCTCCTCTGGTATCTTCTTCTTCTTCAACTACTAATACTTCTACCTCTTCTCCTGTTCCAT
CTTCCCCTGTTAATGTTCCTACAGTTACTTCTTCTTCCTCGTCTCAAGACAACATTCCTTTATCACGACTTCTTAATCACCTTTCCTCAACTGCTGTCCCTGCTCCTTCC
AATTCAGACCATCACCAGTCTTCTGCTTCCACTCCCACTCTTGATGAAAATTTCACTGATCCTCCTCCTGATTCGGTTTCGGATCCTGCTCCTCAATCTACTCCAACCAA
AGTTAAATCCAAAACTAAAAGAGTGTCTACCCAGTCTGGTCGAAGACAGGTTCCTTTGCATGTGAATTCTGTTCCCATAGATGGCATCTCCTTTCATCACGAGTCTCATG
TCCATAAATGGAAATACGTGATTCAGAGACGTATTGCTGCAGAGTCAGATGTTTCTGATGATCATCATTCCTTCTTAGCTGTTATGACTCTAATTTCTCAAGCCAAACTT
CTGACCACGGTCTCTAATGTTGGCCCTTACTATCCCAAGCTGATTAGAGAAATGTTTGTCAACATTCCAACGTCTTTTGACAATCCTAGCAGTCCTGATTATCATACCAT
CCATATCAGAGGATTGCCCTTCTCCTTTTCCCCTCATTCCTTGAATACCTTTCTTGGTATTACTCTTCCTTCTGATTCTCCCTCTCTTCCTACCTCTGATGATCTTGCCT
CTGAGATAACAGGAGGTATTGTCAAAAAGTGGCCATCAAATGGCTATCTATCTGCTGCTCGCCTTAGTGTGAAGTATGCAATTCTTCATAAGATAGGAATCCATAACTGG
CTTCCTTCCAGGCATTCTTCTACTGTCTCTCAATCACTAGCCCACCTGATCTACATGATAGGCACTGGTCAACCTGTTGATTTTGGATCTTTTGTTCTCAACCAACTCAA
ACGACACATAGATTCCTATGCTGTTAAATTGCCTATTTGCTTGCCCCATGAAGCTCATGGCCCTTCTCCTACAAAAATTCAATTAAGTTATCGCCTCTTTCAAGGAGCTC
ATGTTCCTGACATTGACCATTCTTTTCATCCTTCATCTTCCACTCGCCCAAACTATGACAATTTGAGATCTCCTGTTGATGGTTTGTTTTTTCCTCCCTCTTTAGCCAAT
CAAGTCCTTCATGTTTTGACCTCTGAGTCTCGCAGCATCAGCATTCTCATCCATGACCTCACAGACAGAAGAAACGAGATTGACTCTGTTATCACTTCTGTTCAGTTATT
AATTTCTTCAAATCCTGATGCTCCTGCTCCTCAACCTCCATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGCACAAGACGAGGTTATTACTCTTCTCAAGTTCCTGTTCCTAAGAAATCTGTCAACCCACATGTTGGTTCCGCTGTCAAAAACGTGCGTACTAACAAACATGG
GGTCCGTTTGCGGGGTTCGTCCACAATCTCTTCAACTCCTGTGTCTTCCGCTCCTCTGGTATCTTCTTCTTCTTCAACTACTAATACTTCTACCTCTTCTCCTGTTCCAT
CTTCCCCTGTTAATGTTCCTACAGTTACTTCTTCTTCCTCGTCTCAAGACAACATTCCTTTATCACGACTTCTTAATCACCTTTCCTCAACTGCTGTCCCTGCTCCTTCC
AATTCAGACCATCACCAGTCTTCTGCTTCCACTCCCACTCTTGATGAAAATTTCACTGATCCTCCTCCTGATTCGGTTTCGGATCCTGCTCCTCAATCTACTCCAACCAA
AGTTAAATCCAAAACTAAAAGAGTGTCTACCCAGTCTGGTCGAAGACAGGTTCCTTTGCATGTGAATTCTGTTCCCATAGATGGCATCTCCTTTCATCACGAGTCTCATG
TCCATAAATGGAAATACGTGATTCAGAGACGTATTGCTGCAGAGTCAGATGTTTCTGATGATCATCATTCCTTCTTAGCTGTTATGACTCTAATTTCTCAAGCCAAACTT
CTGACCACGGTCTCTAATGTTGGCCCTTACTATCCCAAGCTGATTAGAGAAATGTTTGTCAACATTCCAACGTCTTTTGACAATCCTAGCAGTCCTGATTATCATACCAT
CCATATCAGAGGATTGCCCTTCTCCTTTTCCCCTCATTCCTTGAATACCTTTCTTGGTATTACTCTTCCTTCTGATTCTCCCTCTCTTCCTACCTCTGATGATCTTGCCT
CTGAGATAACAGGAGGTATTGTCAAAAAGTGGCCATCAAATGGCTATCTATCTGCTGCTCGCCTTAGTGTGAAGTATGCAATTCTTCATAAGATAGGAATCCATAACTGG
CTTCCTTCCAGGCATTCTTCTACTGTCTCTCAATCACTAGCCCACCTGATCTACATGATAGGCACTGGTCAACCTGTTGATTTTGGATCTTTTGTTCTCAACCAACTCAA
ACGACACATAGATTCCTATGCTGTTAAATTGCCTATTTGCTTGCCCCATGAAGCTCATGGCCCTTCTCCTACAAAAATTCAATTAAGTTATCGCCTCTTTCAAGGAGCTC
ATGTTCCTGACATTGACCATTCTTTTCATCCTTCATCTTCCACTCGCCCAAACTATGACAATTTGAGATCTCCTGTTGATGGTTTGTTTTTTCCTCCCTCTTTAGCCAAT
CAAGTCCTTCATGTTTTGACCTCTGAGTCTCGCAGCATCAGCATTCTCATCCATGACCTCACAGACAGAAGAAACGAGATTGACTCTGTTATCACTTCTGTTCAGTTATT
AATTTCTTCAAATCCTGATGCTCCTGCTCCTCAACCTCCATCTTAA
Protein sequenceShow/hide protein sequence
MVSTRRGYYSSQVPVPKKSVNPHVGSAVKNVRTNKHGVRLRGSSTISSTPVSSAPLVSSSSSTTNTSTSSPVPSSPVNVPTVTSSSSSQDNIPLSRLLNHLSSTAVPAPS
NSDHHQSSASTPTLDENFTDPPPDSVSDPAPQSTPTKVKSKTKRVSTQSGRRQVPLHVNSVPIDGISFHHESHVHKWKYVIQRRIAAESDVSDDHHSFLAVMTLISQAKL
LTTVSNVGPYYPKLIREMFVNIPTSFDNPSSPDYHTIHIRGLPFSFSPHSLNTFLGITLPSDSPSLPTSDDLASEITGGIVKKWPSNGYLSAARLSVKYAILHKIGIHNW
LPSRHSSTVSQSLAHLIYMIGTGQPVDFGSFVLNQLKRHIDSYAVKLPICLPHEAHGPSPTKIQLSYRLFQGAHVPDIDHSFHPSSSTRPNYDNLRSPVDGLFFPPSLAN
QVLHVLTSESRSISILIHDLTDRRNEIDSVITSVQLLISSNPDAPAPQPPS