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PI0011214 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011214
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr04:13751109..13751657
RNA-Seq ExpressionPI0011214
SyntenyPI0011214
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]1.1e-5265.26Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNS+ G+GY+SSEPVRITGKGK KVA+TCHI VEE  DSKE KK+ SQRSSVFDRI    
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTR QKK  I+VS+K  LV + +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]6.7e-5365.79Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY SSEPVRITGKGK KVA+TCHI VEE  DS+E KK+ SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]3.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
A0A5A7U2W9 Gag protease polyprotein5.5e-5365.26Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNS+ G+GY+SSEPVRITGKGK KVA+TCHI VEE  DSKE KK+ SQRSSVFDRI    
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTR QKK  I+VS+K  LV + +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
A0A5D3BIH8 Uncharacterized protein1.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
A0A5D3C783 Ribonuclease H3.2e-5365.79Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY SSEPVRITGKGK KVA+TCHI VEE  DS+E KK+ SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
A0A5D3D1E5 Ribonuclease H1.9e-5366.32Show/hide
Query:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST
        MAK GYDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA+TCHI VEE  DS+E KK  SQRSSVFDRI  S 
Subjt:  MAKVGYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSST

Query:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
           SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR SAFKRLSVSVTRDQKK  ++VS+K  LV   +E  + F
Subjt:  AHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGGTGGGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGGAAGCTTCAAAAGCAAGGATA
TTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTATTGTGGAAG
AATGTAACGATTCTAAAGAAGACAAGAAAAACGAAAGTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCTTCTACTGCACACTCTTCAGTTTTCCAGAGATTGAATGTA
CCGACAAGGGAGGACAAAAATGAAGGGTCAGCTTCTGAGTCCACCCGACTTTCTGCCTTTCAGAGACTAAATACAACTCCGGCTACGCGAACCTCTGCCTTCAAAAGGTT
AAGTGTGTCGGTGACAAGAGACCAGAAGAAACCTCTCATAGCTGTTTCAAGCAAGCCTGACTTAGTGATGAAGACGAAAGAATTCGCAGCGCTGTTCCATCAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGGTGGGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGGAAGCTTCAAAAGCAAGGATA
TTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTATTGTGGAAG
AATGTAACGATTCTAAAGAAGACAAGAAAAACGAAAGTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCTTCTACTGCACACTCTTCAGTTTTCCAGAGATTGAATGTA
CCGACAAGGGAGGACAAAAATGAAGGGTCAGCTTCTGAGTCCACCCGACTTTCTGCCTTTCAGAGACTAAATACAACTCCGGCTACGCGAACCTCTGCCTTCAAAAGGTT
AAGTGTGTCGGTGACAAGAGACCAGAAGAAACCTCTCATAGCTGTTTCAAGCAAGCCTGACTTAGTGATGAAGACGAAAGAATTCGCAGCGCTGTTCCATCAAGAATGA
Protein sequenceShow/hide protein sequence
MAKVGYDFTTRTEFKSKIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHIIVEECNDSKEDKKNESQRSSVFDRITSSTAHSSVFQRLNV
PTREDKNEGSASESTRLSAFQRLNTTPATRTSAFKRLSVSVTRDQKKPLIAVSSKPDLVMKTKEFAALFHQE