; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011253 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011253
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr01:10279950..10280928
RNA-Seq ExpressionPI0011253
SyntenyPI0011253
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035960.1 uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa]1.3e-5975.47Show/hide
Query:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG
        MS LM+EL+Q+NVEI  AAKEMIK+LG S GKE+ DL++EV NLRKFV+ +LHALRK+VDEVR EC S H+++  AS+STS    GTHNIKVPKPDMYNG
Subjt:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG

Query:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNIL
        TRNATMVENFLF LEQYY+ALGIVDDGAKIANAPNFL E+AQLWW RKH E EKDR IL
Subjt:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNIL

KAA0035961.1 uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa]5.4e-5873.75Show/hide
Query:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG
        MS LM+EL+Q+NVEI  AAKEMIK LG S GKE+ D+++EV NLRKFV+ +LHALRK+VDEVR E  S H+++  AS+STS    GTHNIKVPKPD YNG
Subjt:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG

Query:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNILR
        TRNATMVENFLF LEQYY+ALGI+DDGAKIANAPNFLRE+AQLWWRRKH E EKDR IL+
Subjt:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNILR

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]1.7e-5152.36Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE  EELVQEN EI   AKEMI+++G++F +E+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]1.5e-5252.83Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE+ EELVQEN EI   AKEMI+++G++F KE+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]1.7e-5152.36Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE  EELVQEN EI   AKEMI+++G++F +E+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

TrEMBL top hitse value%identityAlignment
A0A5A7SY30 Retrotrans_gag domain-containing protein6.2e-6075.47Show/hide
Query:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG
        MS LM+EL+Q+NVEI  AAKEMIK+LG S GKE+ DL++EV NLRKFV+ +LHALRK+VDEVR EC S H+++  AS+STS    GTHNIKVPKPDMYNG
Subjt:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG

Query:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNIL
        TRNATMVENFLF LEQYY+ALGIVDDGAKIANAPNFL E+AQLWW RKH E EKDR IL
Subjt:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNIL

A0A5A7T2W8 Retrotrans_gag domain-containing protein2.6e-5873.75Show/hide
Query:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG
        MS LM+EL+Q+NVEI  AAKEMIK LG S GKE+ D+++EV NLRKFV+ +LHALRK+VDEVR E  S H+++  AS+STS    GTHNIKVPKPD YNG
Subjt:  MSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNG

Query:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNILR
        TRNATMVENFLF LEQYY+ALGI+DDGAKIANAPNFLRE+AQLWWRRKH E EKDR IL+
Subjt:  TRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLREAAQLWWRRKHVELEKDRNILR

A0A5A7TAA5 Uncharacterized protein8.1e-5252.36Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE  EELVQEN EI   AKEMI+++G++F +E+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

A0A5A7THC0 Reverse transcriptase domain-containing protein7.4e-5352.83Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE+ EELVQEN EI   AKEMI+++G++F KE+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

A0A5A7VEX8 Polyprotein8.1e-5252.36Show/hide
Query:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK
        VEQV+EGP T+ R    SP+R++K+K    ++H   RL  LE G+ED+Q  VG++SE  EELVQEN EI   AKEMI+++G++F +E+ +L   V  L+ 
Subjt:  VEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQSFGKEINDLVIEVVNLRK

Query:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE
        FV+G+LH L          +D + VECRS H  SN  S+ST     GT NIKVPKPD+YNG RNAT+V+NFLF LE+Y+ ALG+ DD A+I +AP FLR+
Subjt:  FVKGKLHALRKD-------VDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLRE

Query:  AAQLWWRRKHVE
        AAQLWWRRK+ +
Subjt:  AAQLWWRRKHVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAATTCAAGGCTCTATCATTCTCTCAAGCTCACTCTCCACTTTCTTGCCCACTCATTTACGAATTGATACGAGTCACCGTTGAGCAAGTCGTTGAAGGGCCAAC
GACACAAGAACGCGCTATACTACAATCTCCATCACGTAAGGCCAAGGCAAAGACAACGAAAACCCAGGATCATGCCAAAGTTCGTCTTGCAAGATTGGAAAGTGGATTGG
AGGATATGCAAACCAAGGTTGGCAAAATGAGTGAGTTAATGGAGGAGCTAGTCCAAGAGAATGTTGAGATCATCATAGCCGCCAAGGAGATGATCAAGGAGCTTGGACAA
TCGTTTGGCAAGGAGATAAATGACCTTGTCATCGAAGTAGTGAACCTACGTAAGTTTGTTAAAGGCAAGCTCCACGCACTACGTAAAGACGTCGACGAGGTACGTGTTGA
ATGTCGTTCTAATCATAGTGCTAGTAACATGGCATCCTCTAGCACATCATATCCTGCACAAGGCACGCACAACATAAAAGTGCCTAAACCTGACATGTATAATGGCACGA
GGAATGCCACGATGGTGGAGAATTTCTTATTCGACCTTGAGCAATATTATGAGGCCCTAGGAATCGTTGACGATGGTGCAAAAATTGCAAATGCACCTAACTTTCTACGT
GAAGCGGCACAACTATGGTGGCGTAGGAAGCATGTGGAGCTAGAGAAGGACCGTAATATATTAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAATTCAAGGCTCTATCATTCTCTCAAGCTCACTCTCCACTTTCTTGCCCACTCATTTACGAATTGATACGAGTCACCGTTGAGCAAGTCGTTGAAGGGCCAAC
GACACAAGAACGCGCTATACTACAATCTCCATCACGTAAGGCCAAGGCAAAGACAACGAAAACCCAGGATCATGCCAAAGTTCGTCTTGCAAGATTGGAAAGTGGATTGG
AGGATATGCAAACCAAGGTTGGCAAAATGAGTGAGTTAATGGAGGAGCTAGTCCAAGAGAATGTTGAGATCATCATAGCCGCCAAGGAGATGATCAAGGAGCTTGGACAA
TCGTTTGGCAAGGAGATAAATGACCTTGTCATCGAAGTAGTGAACCTACGTAAGTTTGTTAAAGGCAAGCTCCACGCACTACGTAAAGACGTCGACGAGGTACGTGTTGA
ATGTCGTTCTAATCATAGTGCTAGTAACATGGCATCCTCTAGCACATCATATCCTGCACAAGGCACGCACAACATAAAAGTGCCTAAACCTGACATGTATAATGGCACGA
GGAATGCCACGATGGTGGAGAATTTCTTATTCGACCTTGAGCAATATTATGAGGCCCTAGGAATCGTTGACGATGGTGCAAAAATTGCAAATGCACCTAACTTTCTACGT
GAAGCGGCACAACTATGGTGGCGTAGGAAGCATGTGGAGCTAGAGAAGGACCGTAATATATTAAGAATGTGA
Protein sequenceShow/hide protein sequence
MSQFKALSFSQAHSPLSCPLIYELIRVTVEQVVEGPTTQERAILQSPSRKAKAKTTKTQDHAKVRLARLESGLEDMQTKVGKMSELMEELVQENVEIIIAAKEMIKELGQ
SFGKEINDLVIEVVNLRKFVKGKLHALRKDVDEVRVECRSNHSASNMASSSTSYPAQGTHNIKVPKPDMYNGTRNATMVENFLFDLEQYYEALGIVDDGAKIANAPNFLR
EAAQLWWRRKHVELEKDRNILRM