; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011294 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011294
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationchr03:26022049..26027691
RNA-Seq ExpressionPI0011294
SyntenyPI0011294
Gene Ontology termsGO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138655.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]3.1e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_004138656.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]4.0e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_008441202.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]2.4e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]1.5e-4996.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]4.0e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LMF8 Transcription initiation factor IIA subunit 21.5e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A0A0LQ01 Transcription initiation factor IIA subunit 21.9e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2F6 Transcription initiation factor IIA subunit 21.1e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2V9 Transcription initiation factor IIA subunit 21.9e-5098.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 27.4e-5096.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 21.3e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 26.5e-2753.54Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL TYRFCD VWTFI+++ SF+ ++ +    +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 21.3e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 23.9e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q54ND1 Transcription initiation factor IIA subunit 21.6e-2556.44Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEV-VGRIKIVACDSK
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG LHTYRFCD+VWTFIL++A FK E +  V V R+KIVACD+ 
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEV-VGRIKIVACDSK

Query:  L
        +
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)2.8e-4988.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)2.8e-4988.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGGCATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGT
TCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGGTTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAA
mRNA sequenceShow/hide mRNA sequence
AGACAAAACACATTGAAGGCTATTTTTGACGATTTCCTAAGAAAACCCTAACAATATTCCTTCTCCCTCTCTTTTTCGTGGACACCCGGCCTTGAAATCCTCTCTCCGAC
AACGATTCGCAGCGACTACTAGTGACTGAGCGACGGTAGAATCTCCCTCCGGCATCCCATTTCTGTCTTCAGCAGCGTGCTTCTTCATCAACCACTCGAGATTTGGAGTT
CCAGCGACGGCGGCGCTTACATCCTTCAGTGGCGGTGACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAAGCGAAGCTTTCCTCCCTTTCGGCAAGATC
TTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGGCATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCC
GAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTT
CTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGGTTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTT
CACAATAAGCTTTCATACATCAGGAATATTCGATGAAATTTACATAGTTATTTGCTGATGATGGAGCGAAGAATAGTCACGGTGAGGAGGAATGGCCATCCAGGAAGAGA
TTCAAACGTGATTCTGTAAAGTCATCAACCTGAACAGCAAAAAGTTGCATTGACGATACATTGACTGTAATTGGCTTCTAAAGTTGATTACATAACAATTACACGACCCT
TCTTCCAGTTTAACGACAATAAAACATGATGTATGTTTCGATACTGTGCTATTAATTTTCTTTTGTACTATTTCCTTTGAACCTACTTTCTGTACATTAGAATTCAAATT
ACCACTTCGAAAGGAATAAACTTGATTGAAACTATTTTCTTATTAGTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTTGAATAATAAGAAAGAA
TCAAACATTTTTCACATTTCTTTTATA
Protein sequenceShow/hide protein sequence
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ