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PI0011340 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011340
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:16664486..16665722
RNA-Seq ExpressionPI0011340
SyntenyPI0011340
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]1.6e-5069.87Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R+EE+SEK D IDAV GR++GLPI+ELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

KAA0040892.1 uncharacterized protein E6C27_scaffold345G00520 [Cucumis melo var. makuwa]1.6e-5069.23Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK + IDAV GR++GLPIKELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDF+  LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

TYK03044.1 uncharacterized protein E5676_scaffold46G001390 [Cucumis melo var. makuwa]1.6e-5069.23Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK + IDAV GR++GLPIKELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDF+  LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-5067.95Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++  +GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE        +NYERG SS+   AH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

TYK22948.1 uncharacterized protein E5676_scaffold386G00340 [Cucumis melo var. makuwa]7.2e-5170.51Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++GLPI+ELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

TrEMBL top hitse value%identityAlignment
A0A5A7TBQ6 Retrotrans_gag domain-containing protein7.8e-5169.23Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK + IDAV GR++GLPIKELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDF+  LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

A0A5D3BQN3 Retrotrans_gag domain-containing protein7.8e-5169.87Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R+EE+SEK D IDAV GR++GLPI+ELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

A0A5D3BV48 Retrotrans_gag domain-containing protein7.8e-5169.23Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK + IDAV GR++GLPIKELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDF+  LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

A0A5D3BYE6 Reverse transcriptase5.9e-5167.95Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++  +GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE        +NYERG SS+   AH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

A0A5D3DHI2 Retrotrans_gag domain-containing protein3.5e-5170.51Show/hide
Query:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++GLPI+ELL RVD LE  T     INYERG SSS  AAH+EER+
Subjt:  MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTT---RINYERGSSSSSPAAHVEERI

Query:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI
         ELD++QK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPAGGAI
Subjt:  CELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAGCGAAACAGATGGGCAAGGCCCACGCAGACCGGTTGGTAGAGATCGAGGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCCTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGTTGATGCTATTGACGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAA
AGACTACCAGAATAAACTACGAACGTGGGAGCAGCTCGTCAAGCCCGGCTGCCCACGTGGAGGAACGGATTTGCGAGCTAGATAGCTCCCAAAAATCGATTGTCGAGATG
ATAAACGGCATGTCAGAGGACTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGTGCGAGGGTAAATCTCACAATGCGAGCCATGGCGAACCAAGC
TCCAGCTGGAGGAGCTATACAAGCCTTAAGCCATGGGCGAAGACCAAACTGTACGAACAGAGGATCCAAGAACTCTCCTCGGCGTACGCGGCGGCAGAACGACTATTTGA
CCTGTCCAGTGAGTCTCAAGATACGAGACGTCCTTCGAGTTCCTCATCTGGAGGAAACAAGAACAATCATGCTGGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTA
GTGGCGATCGCAGGCCCTTCCAATCAAATTCTGGGAACACGGGGCGAGGACAGAATCCCCAAAACTCTCAGAATCGTCTCCTTGCCTGTTTCATATGTAAGGGGCCACAC
CTGGCAAGAGAGTGCCCGAACTGAACCGCCTTCAACGCCTTTCAGGCTGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAGCGAAACAGATGGGCAAGGCCCACGCAGACCGGTTGGTAGAGATCGAGGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCCTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGTTGATGCTATTGACGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAA
AGACTACCAGAATAAACTACGAACGTGGGAGCAGCTCGTCAAGCCCGGCTGCCCACGTGGAGGAACGGATTTGCGAGCTAGATAGCTCCCAAAAATCGATTGTCGAGATG
ATAAACGGCATGTCAGAGGACTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGTGCGAGGGTAAATCTCACAATGCGAGCCATGGCGAACCAAGC
TCCAGCTGGAGGAGCTATACAAGCCTTAAGCCATGGGCGAAGACCAAACTGTACGAACAGAGGATCCAAGAACTCTCCTCGGCGTACGCGGCGGCAGAACGACTATTTGA
CCTGTCCAGTGAGTCTCAAGATACGAGACGTCCTTCGAGTTCCTCATCTGGAGGAAACAAGAACAATCATGCTGGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTA
GTGGCGATCGCAGGCCCTTCCAATCAAATTCTGGGAACACGGGGCGAGGACAGAATCCCCAAAACTCTCAGAATCGTCTCCTTGCCTGTTTCATATGTAAGGGGCCACAC
CTGGCAAGAGAGTGCCCGAACTGAACCGCCTTCAACGCCTTTCAGGCTGCCTTAA
Protein sequenceShow/hide protein sequence
MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKVDAIDAVTGRLDGLPIKELLTRVDTLEAKTTRINYERGSSSSSPAAHVEERICELDSSQKSIVEM
INGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPAGGAIQALSHGRRPNCTNRGSKNSPRRTRRQNDYLTCPVSLKIRDVLRVPHLEETRTIMLVLQRPEAEIGDL
VAIAGPSNQILGTRGEDRIPKTLRIVSLPVSYVRGHTWQESARTEPPSTPFRLP