CuGenDBv2

Gene ID	PI0011368
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr11:21461512..21462128
RNA-Seq Expression	PI0011368
Synteny	PI0011368
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

5.4e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]

5.4e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

4.1e-55

66.87

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCII EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

5.4e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

5.4e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRU1 Retrotransposon protein

2.6e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

A0A5A7TRV1 Retrotransposon protein

2.6e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

A0A5A7VES2 Retrotransposon protein

2.0e-55

66.87

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCII EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

A0A5D3CHA0 Retrotransposon protein

2.6e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

A0A5D3DCZ1 Retrotransposon protein

2.6e-55

66.26

Show/hide

Query:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        MAE++P   +  TT IDCRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+ EK+L+D+WV+SHP AKGLLNKPFP+YD+L YVFGRDRATG  AETF D
Subjt:  MAERMPRHNI-TTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

Query:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ
        VG N P  GYD F   DGN+ +FP +Y+QG+D+S D +  +R  R SEGR GSSG KRKRG Q
Subjt:  VGPNMP-AGYDGFSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30140.1 unknown protein

4.0e-08

31.71

Show/hide

Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD
        R+K +K  +Q+  +++  S SGFGW+ E K      +++  ++K+HP  K +  +   H++DL  +FG   ATG  A    D
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGD

AT2G24960.1 unknown protein

9.3e-05

32.08

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Query:  GFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATG
        GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Subjt:  GFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATG

AT2G24960.2 unknown protein

1.2e-07

27.03

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Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATG
        R K ++R +  I  +     +GF W+     +I + D++++++++HP A+    K  P Y +LC++FG++ + G
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATG

AT4G02210.1 unknown protein

5.3e-08

27.27

Show/hide

Query:  NITTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFG
        N     +  R K+++R F AI  +      GF W++E + +  + +++  ++K+H  A+  + +P P+Y DLC + G
Subjt:  NITTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein

5.3e-08

27.27

Show/hide

Query:  NITTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFG
        N     +  R K+++R F AI  +      GF W++E + +  + +++  ++K+H  A+  + +P P+Y DLC + G
Subjt:  NITTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCGAGAGGATGCCGAGACATAACATAACGACTACGACAATAGATTGTCGAATCAAGACTATGAAAAGAGCATTCCAAGCGATATCTGAAATGAGGGGCCCATCGTG
CAGTGGGTTCGGTTGGAATGATGAGCTCAAATGCATCATTGTCGAGAAAGACTTATATGATAGTTGGGTGAAGAGTCATCCAACTGCGAAGGGCCTCCTAAACAAACCAT
TTCCCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGGCGATGTTGGGCCGAACATGCCTGCAGGATACGATGGA
TTTTCCGCGTGTGACGGGAACGATATGGAGTTCCCAATGATGTACAATCAGGGGTTGGACATGTCACCTGACGGCATAATAGGTACACGATTCGGTCGGTTGTCTGAGGG
TAGGGCTGGTTCGAGTGGTTTGAAGAGGAAACGGGGAGAGCAGGCTTTGGAGGCGGCAAAAATTATTTGCGCGCCATGGAATATGCTAATGACTAGCTGA

mRNA sequence

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Protein sequence

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MAERMPRHNITTTTIDCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYDSWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGPNMPAGYDG
FSACDGNDMEFPMMYNQGLDMSPDGIIGTRFGRLSEGRAGSSGLKRKRGEQALEAAKIICAPWNMLMTS

PI0011368 (gene) of Melon (PI 482460) v1 genome