CuGenDBv2

Gene ID	PI0011373
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	UBX domain-containing protein 1-A
Genome location	chr05:16292659..16294887
RNA-Seq Expression	PI0011373
Synteny	PI0011373
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR009060 - UBA-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK21595.1 chromatin assembly factor 1 subunit A [Cucumis melo var. makuwa]

3.8e-23

58.06

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

XP_004138965.1 chromatin assembly factor 1 subunit A-B [Cucumis sativus]

3.3e-22

56.77

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTA+AT ALFYS                       + LV   T  +                   ERARKKKEEE+KI ER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

XP_008457228.1 PREDICTED: chromatin assembly factor 1 subunit A [Cucumis melo]

3.8e-23

58.06

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

XP_022138702.1 UBX domain-containing protein 1 [Momordica charantia]

3.6e-21

55.48

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEV+KNIL ELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRI+A RKAEK EEKRAR+K  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

XP_038874495.1 chromatin assembly factor 1 subunit A-B [Benincasa hispida]

8.6e-23

57.42

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAR+K  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LL71 UBA domain-containing protein

1.6e-22

56.77

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTA+AT ALFYS                       + LV   T  +                   ERARKKKEEE+KI ER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

A0A1S3C4L3 chromatin assembly factor 1 subunit A

1.9e-23

58.06

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

A0A5D3DDJ0 Chromatin assembly factor 1 subunit A

1.9e-23

58.06

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNKNILEELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

A0A6J1CBW3 UBX domain-containing protein 1

1.7e-21

55.48

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEV+KNIL ELEAMGFPTARAT ALFYS                       + LV   T  +                   ERARKKKEEE+KIAER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEEENERKRI+A RKAEK EEKRAR+K  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

A0A6J1KGZ6 chromatin assembly factor 1 subunit A

2.3e-21

55.48

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER
        MVVPEVNK+ILEELEAMGFPTARAT AL+YS                       + LV   T  +                   ERARKKKEEE+K+AER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------VKLVSLFTNSQ------------------MERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA RIEE NERKRILA RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein

8.5e-21

49.68

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Query:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------------------------VKLVSLFTNSQMERARKKKEEEDKIAER
        MVVP+V+ NILEELEAMGFP ARAT AL YS                                          + V L      ERARKKKEEE+K  ER
Subjt:  MVVPEVNKNILEELEAMGFPTARATHALFYS-----------------------------------------VKLVSLFTNSQMERARKKKEEEDKIAER

Query:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK
        ER    EKERI IGKELLEA R+EE NERKR++  RKAEK EEKRAREK  + L+
Subjt:  ERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFVKNLK

AT5G48690.1 CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), UBA-like (InterPro:IPR009060)

1.4e-10

42.57

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Query:  EVNKNILEELEAMGFPTARATHALFYS--------VKLV------SLFTNSQM----------------------------ERARKKKEEEDKIAERERE
        EVN  +L+ELE MGF  ARA  AL +S        V  +      S F N  +                            E+ARK +EE++   +RERE
Subjt:  EVNKNILEELEAMGFPTARATHALFYS--------VKLV------SLFTNSQM----------------------------ERARKKKEEEDKIAERERE

Query:  RYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFV
        R  EKERI  GKEL+E  RI EENERKR +A RKAEK EEK+AREK +
Subjt:  RYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFV

AT5G48690.2 FUNCTIONS IN: molecular_function unknown

2.0e-09

54.12

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Query:  HALFYSVKLVSLFTNSQMERARKKKEEEDKIAERERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFV
        H +     L+    N + E+ARK +EE++   +RERER  EKERI  GKEL+E  RI EENERKR +A RKAEK EEK+AREK +
Subjt:  HALFYSVKLVSLFTNSQMERARKKKEEEDKIAERERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEK-EEKRAREKFV

Sequences

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CDS sequence

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ATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCATGCACTCTTTTATTCTGTCAAACTAGTATCCTT
GTTCACAAATTCACAAATGGAACGGGCTAGGAAGAAAAAAGAGGAGGAAGACAAGATAGCGGAAAGAGAAAGGGAAAGGTATTGGGAAAAGGAGAGAATTCCAATTGGCA
AGGAGCTCTTAGAAGCAAACAGGATTGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTGGAGAAAAGCTGAAAAAGAAGAGAAAAGAGCCAGGGAAAAATTCGTCAAA
AACTTGAAGAGGACAAGTATTGTGGACAAATGTTGGCTGATTAGGCCGAAGTGA

mRNA sequence

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Protein sequence

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MVVPEVNKNILEELEAMGFPTARATHALFYSVKLVSLFTNSQMERARKKKEEEDKIAERERERYWEKERIPIGKELLEANRIEEENERKRILAWRKAEKEEKRAREKFVK
NLKRTSIVDKCWLIRPK

PI0011373 (gene) of Melon (PI 482460) v1 genome