; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011408 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011408
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:27385548..27386386
RNA-Seq ExpressionPI0011408
SyntenyPI0011408
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]4.5e-5756.89Show/hide
Query:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV
        +N  FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLRQM QTTRKG+ KMEEYL  MKT  D+L Q  + V  R+L+
Subjt:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV

Query:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNN
        SQ LLGLDE YN VI VIQGK DISW+DMQS+LL F+K L+HQN+Q   +  GNI  +   N AQ   ++  R   N ++    R  F+GQRG+      
Subjt:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNN

Query:  RGRGNKPTCQICVFSKLSKSHCICH
            N PTCQ+C   K   S  +C+
Subjt:  RGRGNKPTCQICVFSKLSKSHCICH

KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]1.7e-5662.83Show/hide
Query:  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVI
        LYNS+ PEV VQL+GF NAKD+WEAT D FGV+SRAEEDFLRQ FQTTRKG+  ME+YL+ MKT AD+L Q ++ +  R+L+SQ LLGLDE YNPVI VI
Subjt:  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVI

Query:  QGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN--NRGRGNKPTCQ
        QGK +ISW+DMQS+LL F+KRL+HQNSQ+N GNI  N T N AQ+R  ++PR   N Q+  N R +F G RG   NS    RGRG+K TCQ
Subjt:  QGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN--NRGRGNKPTCQ

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-5362.12Show/hide
Query:  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISW
        +A+QLMGF NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRK     E+YL+ MKT +D L Q  + V  R+ +SQ LLGLDE YNPVIAVIQGK +ISW
Subjt:  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISW

Query:  IDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKPTCQICVFSKLSKSHCICH
        IDMQSELLTF+KRLEHQ++Q+NT NI  N+  N AQNR  SD R   N Q+  N R +  GQRG         +GRGNKPTCQ+C   K   S  +C+
Subjt:  IDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKPTCQICVFSKLSKSHCICH

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]1.2e-5252.8Show/hide
Query:  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSL
        ++NP +E W+  D LLLGWLYNSM PEVA+Q+MG   AKDLW +   LFGVQSR EED+LR +FQTTRKG++KMEEYL+TMK   D+L Q  + +  R+L
Subjt:  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSL

Query:  VSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNR
        VSQ LLGLDE YN ++A+IQG+ D+SW+DMQSELL +++RLEHQ++Q+ T       N + N    R V+     NS  Q+       GQRG G +   R
Subjt:  VSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNR

Query:  GRG---NKPTCQIC
        GRG    KP CQ+C
Subjt:  GRG---NKPTCQIC

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]1.2e-5252.8Show/hide
Query:  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSL
        ++NP +E W+  D LLLGWLYNSM PEVA+Q+MG   AKDLW +   LFGVQSR EED+LR +FQTTRKG++KMEEYL+TMK   D+L Q  + +  R+L
Subjt:  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSL

Query:  VSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNR
        VSQ LLGLDE YN ++A+IQG+ D+SW+DMQSELL +++RLEHQ++Q+ T       N + N    R V+     NS  Q+       GQRG G +   R
Subjt:  VSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNR

Query:  GRG---NKPTCQIC
        GRG    KP CQ+C
Subjt:  GRG---NKPTCQIC

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein8.4e-5762.83Show/hide
Query:  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVI
        LYNS+ PEV VQL+GF NAKD+WEAT D FGV+SRAEEDFLRQ FQTTRKG+  ME+YL+ MKT AD+L Q ++ +  R+L+SQ LLGLDE YNPVI VI
Subjt:  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVI

Query:  QGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN--NRGRGNKPTCQ
        QGK +ISW+DMQS+LL F+KRL+HQNSQ+N GNI  N T N AQ+R  ++PR   N Q+  N R +F G RG   NS    RGRG+K TCQ
Subjt:  QGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN--NRGRGNKPTCQ

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X11.9e-4550.22Show/hide
Query:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV
        +NP FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLRQM QTTRK                                
Subjt:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV

Query:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ-RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNNRG
             GLDE YN VI VIQGK DISW+DMQS+LL F+KRL+HQN+Q +NTGNI  +   N AQ   ++  R   N ++    R  F+GQRG+        
Subjt:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ-RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNNRG

Query:  RGNKPTCQICVFSKLSKSHCICH
          N PTCQ+C   K   S  +C+
Subjt:  RGNKPTCQICVFSKLSKSHCICH

A0A5A7SIT7 Uncharacterized protein2.2e-5756.89Show/hide
Query:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV
        +N  FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLRQM QTTRKG+ KMEEYL  MKT  D+L Q  + V  R+L+
Subjt:  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLV

Query:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNN
        SQ LLGLDE YN VI VIQGK DISW+DMQS+LL F+K L+HQN+Q   +  GNI  +   N AQ   ++  R   N ++    R  F+GQRG+      
Subjt:  SQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSNN

Query:  RGRGNKPTCQICVFSKLSKSHCICH
            N PTCQ+C   K   S  +C+
Subjt:  RGRGNKPTCQICVFSKLSKSHCICH

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-5462.12Show/hide
Query:  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISW
        +A+QLMGF NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRK     E+YL+ MKT +D L Q  + V  R+ +SQ LLGLDE YNPVIAVIQGK +ISW
Subjt:  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISW

Query:  IDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKPTCQICVFSKLSKSHCICH
        IDMQSELLTF+KRLEHQ++Q+NT NI  N+  N AQNR  SD R   N Q+  N R +  GQRG         +GRGNKPTCQ+C   K   S  +C+
Subjt:  IDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKPTCQICVFSKLSKSHCICH

A0A5D3E3L7 Uncharacterized protein8.7e-4666.43Show/hide
Query:  KQINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRS
        K +NP +E+WVT+D+LLLG +YNSM P+VA+QLMGFN AKDLWEA Q+LFG++SRAEE FLR  FQTTR+G+ KME+YL+ MK  AD+L Q  + V  R 
Subjt:  KQINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRS

Query:  LVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLE
        L+SQ LLGLDE YNPV AVIQGK DISW+DMQSELL F+  +E
Subjt:  LVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)8.4e-0926.32Show/hide
Query:  EKWVTTDLLLLGWLYNSMNPEVAVQLMGFN-NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTL
        ++W   D L+  W+Y ++   +   ++     A+DLW + ++LF     A         +TT    + + EY + +K+ +D L+  D+ +S R LV   L
Subjt:  EKWVTTDLLLLGWLYNSMNPEVAVQLMGFN-NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTL

Query:  LGLDETYNPVIAVIQGKSDI-SWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPRLPNSQYQNNAR----PSFTGQRGSGQ-----NS
         GL E Y+ ++ VI+ KS   S+ + +S LL  + RL ++ S+ +  +      +N          R P   + NN+      S    RG G      N+
Subjt:  LGLDETYNPVIAVIQGKSDI-SWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPRLPNSQYQNNAR----PSFTGQRGSGQ-----NS

Query:  NNRGRGNKP
        NN  R N+P
Subjt:  NNRGRGNKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCATTGATGGAGCATCCTCCTCACAAGGAAGAACTACTCAAACAAATAAATCCTGACTTTGAAAAATGGGTCACCACGGATTTACTTCTTCTCGGCTGGCTGTA
TAACTCCATGAATCCTGAAGTAGCTGTGCAACTTATGGGATTTAACAATGCAAAAGACCTGTGGGAAGCAACACAGGATCTGTTTGGAGTTCAATCAAGAGCCGAAGAAG
ATTTCCTACGCCAGATGTTTCAAACTACTCGGAAAGGTAGTATGAAGATGGAAGAATATCTAAAAACCATGAAGACTTATGCTGATAGTCTCAGTCAAACAGACAATAAT
GTATCCACAAGATCTCTGGTTTCACAAACTCTCTTAGGCCTCGATGAAACGTACAATCCGGTTATTGCTGTCATTCAAGGTAAGTCTGATATATCCTGGATTGATATGCA
ATCTGAACTTCTTACATTTGACAAACGGTTGGAGCATCAGAATTCTCAAAGGAACACTGGGAATATCGGAGGCAATATCACGGCAAATTTTGCTCAAAACAGAGGAGTCT
CTGATCCTCGACTTCCTAACTCTCAATACCAGAATAATGCTCGACCATCATTCACTGGACAAAGAGGCAGTGGTCAGAACTCAAACAATAGAGGCCGTGGAAATAAACCA
ACCTGTCAAATTTGTGTCTTCTCAAAGCTCTCCAAATCCCACTGCATTTGTCACTGGTCAGACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTACCATTGATGGAGCATCCTCCTCACAAGGAAGAACTACTCAAACAAATAAATCCTGACTTTGAAAAATGGGTCACCACGGATTTACTTCTTCTCGGCTGGCTGTA
TAACTCCATGAATCCTGAAGTAGCTGTGCAACTTATGGGATTTAACAATGCAAAAGACCTGTGGGAAGCAACACAGGATCTGTTTGGAGTTCAATCAAGAGCCGAAGAAG
ATTTCCTACGCCAGATGTTTCAAACTACTCGGAAAGGTAGTATGAAGATGGAAGAATATCTAAAAACCATGAAGACTTATGCTGATAGTCTCAGTCAAACAGACAATAAT
GTATCCACAAGATCTCTGGTTTCACAAACTCTCTTAGGCCTCGATGAAACGTACAATCCGGTTATTGCTGTCATTCAAGGTAAGTCTGATATATCCTGGATTGATATGCA
ATCTGAACTTCTTACATTTGACAAACGGTTGGAGCATCAGAATTCTCAAAGGAACACTGGGAATATCGGAGGCAATATCACGGCAAATTTTGCTCAAAACAGAGGAGTCT
CTGATCCTCGACTTCCTAACTCTCAATACCAGAATAATGCTCGACCATCATTCACTGGACAAAGAGGCAGTGGTCAGAACTCAAACAATAGAGGCCGTGGAAATAAACCA
ACCTGTCAAATTTGTGTCTTCTCAAAGCTCTCCAAATCCCACTGCATTTGTCACTGGTCAGACCTCTAA
Protein sequenceShow/hide protein sequence
MLPLMEHPPHKEELLKQINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNN
VSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNRGRGNKP
TCQICVFSKLSKSHCICHWSDL