CuGenDBv2

Gene ID	PI0011423
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr07:16117894..16122900
RNA-Seq Expression	PI0011423
Synteny	PI0011423
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-53

74.25

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA  NE VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

6.5e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

6.5e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

6.5e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

6.5e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.1e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

A0A5A7SNP8 Gag/pol protein

1.1e-53

74.25

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Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA  NE VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

A0A5A7TU93 Gag/pol protein

3.1e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

A0A5A7V4M1 Gag/pol protein

3.1e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

A0A5D3CPJ6 Gag/pol protein

3.1e-53

73.65

Show/hide

Query:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM TAR+IMDSLQ+MF Q S QI+H+A+KY+YN+RM E   VREHVL+MMV FNVA+ N  VIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SG+KS PSSSG KK  KKKGG+G
Subjt:  KIKYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGSKSAPSSSGTKKIHKKKGGKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCGACGTACTGAGCAAGAAACATGAGTCCATGTTCACTGCACGTCAGATCATGGACTCCCTCCAGAAGATGTTTGAACAACCGTCCATTCAAATCCGGCACGAGGC
TATTAAATACGTTTATAATTCCCGTATGAAGGAAGACCAATTTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAAAAACGAATGAGACGGTCATTG
ACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTT
AATGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGATCCAA
GTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCATAAGAAGAAAGGAGGAAAGGGGAAAGGTCCATTAGATCCCCTTCCTAGCTCGTAA

mRNA sequence

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Protein sequence

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MSDVLSKKHESMFTARQIMDSLQKMFEQPSIQIRHEAIKYVYNSRMKEDQFVREHVLDMMVQFNVAKTNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLL
NELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGSKSAPSSSGTKKIHKKKGGKGKGPLDPLPSS

PI0011423 (gene) of Melon (PI 482460) v1 genome